Lhal005505.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- ZIPIC
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000013.1:171686-173464[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.006 0.35 11.6 3.4 2 23 184 205 183 205 0.98 2 13 2.2e-05 0.0013 19.2 2.3 1 23 211 233 211 233 0.97 3 13 0.0013 0.074 13.7 0.1 3 23 259 279 258 279 0.97 4 13 0.00055 0.032 14.8 0.7 1 23 285 308 285 308 0.90 5 13 0.027 1.6 9.5 2.8 1 23 316 338 316 338 0.96 6 13 1.5e-06 8.5e-05 22.9 0.5 1 23 344 366 344 366 0.98 7 13 0.00071 0.041 14.5 0.2 1 23 372 395 372 395 0.89 8 13 0.00036 0.021 15.4 3.4 2 23 402 423 401 423 0.96 9 13 9.2e-06 0.00054 20.4 0.5 1 23 429 452 429 452 0.96 10 13 0.47 28 5.6 0.9 3 23 459 476 458 476 0.80 11 13 5e-05 0.0029 18.1 0.2 1 23 482 505 482 505 0.91 12 13 0.16 9.6 7.0 0.1 1 23 511 538 511 538 0.85 13 13 0.00084 0.049 14.3 1.6 1 23 544 567 544 567 0.94
Sequence Information
- Coding Sequence
- ATGGAGTTCAAAGTGTGTCGCGTGTGCCTGGGAAACTCTGCATCGATCAGCCTGTTCGAGCAGCAGGAAGGCACGCAGTACCGCGCGCAGATAATGAAGTGCGTGAACGTCAGCATCGAGGAGGGAGACGGGTTGCCCGACGCCATGTGCGCGGCCTGCGCCGGCGACCTCGCCGTCAGCTTCCAGTTCGCGTTGAGGTGCGAGGCCTCCGACCGAGCCCTGCGCTCGACCCTTCCCTGCGTTATCGAACAAACTGACACCCCTGACCAGAAAGAAGAAGAAGAAGAAATCTATATCCCTAAGATCAAATATGAGATCCTCGAAACTGATATCAAACTTGAAGCCTTAACGGAGTGGACAGAATATGGCAGTGAAATAGATGACTATCAATTCTCAGACTCTAAAAATGATTTAGATTTGCACAGTCAACCGACTACAGAGATACATAAAGTAGAAACTAAAAAAAATAGAAATAAATGTAAACATGAAATGAGGCGAATACCAAAATATTTACACAAAGAAAAGCGGAGAGTGTACAAGGGTCCCATGAAGTGCCATGTGTGTGGCCGGGTCATTTCGTGTCAATCTGCGTATAAGCTTCATATGCGCTCACACACCAAAGAAAAGCCATTTAGTTGTGATATCTGTAAAAAAAGCTATGGTAGTAAATATACATTGAAAAATCACATTTACAGACATTACAACATGGTTGCAAAACCACGAAGAAAACCTAAATCTCACCCAGTTGAAACTGAGAAAGACGTATCAATATTATGTGTTGTTTGTGGATTGAAACTGAAAAGCCCCTCATTACTGGAGGTACACATGACAAAGCACACGGGGGAAAAGCCTTTTGCCTGTTCCAAGTGTGATAAACGGTTCAGGCTCATGGGTTCTCTAACGAGGCACTTTGCACTCGTGCATCGAAAAGATGAAACCTCTAAATACATTTGTGATTTTTGTGGTAAAAAATTCAAATGCAAGTATTACATCGGTATCCATTTGAGGATCCACACCGGAGAAAAGCCATACTCGTGTCCGGTTTGTCCAAAGAAGTTTAGTCAGATCACCACCCTCATTCGTCACAAGCGAGTACATACCGGAGACAAGCCATTCGCCTGCAAAACCTGTGGAAAGGCCTTCCCAGACAGCAGCTCTAGAAATTTACATGAAATCCAAATGCACACAAATGTTAAAAAATTAACTTGCCACATCTGTAAGAAAGAACTGAAAAGCAAAAAATCACTTCAAACACACTTAAACTTGCACAATAATCCTAAACAGTTTGTGTGCAGCCGCTGCGGGGCCACTTTCACCACCAAGGGCAGCCTGACTGCTCACACCTCTAGACTACACTCGGAAAAAGCTGGGATGTGTACAATTTGTAATAAAGAATTTCCCGATATACAGGCTCACATAAGGATTCATAGCGGAGAGAAGCCGTTCGTTTGCAAGGTCTGCGATCGGGCATTTATATCCCGGGGCAGCTTGGTGAGACACACGGACGCCAAGCACAAGAGCGTGGCTGCGTTCAAGTGCATGAGAGAGGCGGGGCGGTGCGCGCTGGCCTTCCGCACGCGGGTACAGCTCGAGCAGCACGAGCTGCGCGCGCACGCGGCCGGCGCGCCCTACGCGTGCTCCGTCTGCGCGCGCGCCTTCCACCGCGCATCCGACCTCTCGCGGCATCTGCACCTCAACCACGACGTCAAAACTAAACTCAAATCATATTATAAGACTGAAAAAACAGAAAAAAAAATGATAATAAATAAATTCAACTGA
- Protein Sequence
- MEFKVCRVCLGNSASISLFEQQEGTQYRAQIMKCVNVSIEEGDGLPDAMCAACAGDLAVSFQFALRCEASDRALRSTLPCVIEQTDTPDQKEEEEEIYIPKIKYEILETDIKLEALTEWTEYGSEIDDYQFSDSKNDLDLHSQPTTEIHKVETKKNRNKCKHEMRRIPKYLHKEKRRVYKGPMKCHVCGRVISCQSAYKLHMRSHTKEKPFSCDICKKSYGSKYTLKNHIYRHYNMVAKPRRKPKSHPVETEKDVSILCVVCGLKLKSPSLLEVHMTKHTGEKPFACSKCDKRFRLMGSLTRHFALVHRKDETSKYICDFCGKKFKCKYYIGIHLRIHTGEKPYSCPVCPKKFSQITTLIRHKRVHTGDKPFACKTCGKAFPDSSSRNLHEIQMHTNVKKLTCHICKKELKSKKSLQTHLNLHNNPKQFVCSRCGATFTTKGSLTAHTSRLHSEKAGMCTICNKEFPDIQAHIRIHSGEKPFVCKVCDRAFISRGSLVRHTDAKHKSVAAFKCMREAGRCALAFRTRVQLEQHELRAHAAGAPYACSVCARAFHRASDLSRHLHLNHDVKTKLKSYYKTEKTEKKMIINKFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -