Lhal018868.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000071.1:306723-332715[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 6.1 7.7 0.0 1 23 581 603 581 603 0.96 2 11 7.2e-05 0.0042 17.6 2.8 1 23 618 640 618 640 0.98 3 11 1.4e-05 0.0008 19.9 4.0 1 23 646 668 646 668 0.99 4 11 9.6e-05 0.0056 17.2 1.4 1 23 675 697 675 697 0.98 5 11 6.2e-06 0.00036 21.0 0.2 1 23 703 725 703 725 0.93 6 11 0.0003 0.017 15.7 0.3 1 23 731 753 731 753 0.97 7 11 1.3e-05 0.00076 19.9 1.6 1 23 759 782 759 782 0.96 8 11 6e-06 0.00035 21.0 0.2 1 23 788 811 788 811 0.95 9 11 4.4e-05 0.0026 18.3 1.2 2 23 818 839 817 839 0.97 10 11 5e-05 0.0029 18.1 1.2 1 23 845 867 845 867 0.96 11 11 0.004 0.23 12.1 0.1 1 23 873 895 873 895 0.97
Sequence Information
- Coding Sequence
- ATGATTGGTATTCAGTTGGAACGGGGCTCTCAGGACAATATGTTGTGCAGTGACTGCTACATAAACTGTGAAGACTATGATACGTATAAGACTAATATGGAAAACTTGAAAATCAAAATCATGGAACAGTATAAAAAAACAATTGAAAGTAATTCTACAAATCTGGTGGTTCTTAAAAAGACTGAAAATCCAATTAATGTGTCTCCTAAGAAAAACAAAGGTTTTGTGGTGCCATCATCCAAGCTCCAACCGGTGCCTGCTGACTTTCAACTTAATTTGGACAAAATAGCGGCCGTCACTGTAGCCAACTCTAAAGCATTGACACAAAAGTCATTACTGAATTTAAAAGTAACGATTGGAGACTCAGTTCTTACACAAAGTTTAACAGGCTCAACCGTTCAAATAGCCAAACCTAATATCGACCTAAACAGCCCTATTAACATAGGTCAACCTACAAGAAAATTAGCACAATCTAGTATCAAAATAGTTCAACCTACTGGCAAAATATCCCAACCTACTATCAAAATAGTTCAACCCACTAGTAAAATAGCTCAACCTACTATGAAAATAGCTCAACCTTCAGTGAAAATAGTTAAAGCCACTAACAAAATAGCTCAACCTTCTAATAAAGAAGCTCAACTTAGTTACAAAATAGTTCAATCCACTAGCAAAATTGATCAACCCACTAACAAAATTGAACAACCCACTAACAAAATTGAACAACCCACTAACAAAATTGATCAACCGACCCTCGACACGACAGAAGGCACAGGAATTGAATGGAGTGTGGATTTTCTTCATGAAGATTTGTTCCCGCATAGCAATATAAAGAATAATGAAGGTGATGACGATAATGATAATTGCGATGAGGATAATGATAATGATGATGAAGATAATGATAATGGTGATGAAGATAATGATAATGATGCTGAACAAAATGATGACGATAATGATAAAAACGAAATAAAAATTGATGCAGATTGGGCTGCGGATTCTCCAAAAACTGTTCCTATCGTGCTAGACCCTAATCAGATAAAGTCTGAAGATTCTGACGGCACTCAGTACATTAATGCTGAAGATTTAATGATGGGAAATATTCGGATATTAGGCGAAGATGGTGAACAACGGAAGGCTTGCGCCGACCCCGAGCTCCGCTTGCAGTGCATACCTCCCCGTGCACTACAGCCGTCCCGCCTTCTCACGGCCTGTGTTAACCGACAATACGCGCCCGCCCGGGCAGCTTCGGACGGCCTGTGGCGCGGCGCGGCCCGTACTAACACGGGCCGTGTGAAGCCATCATTAGATACAATAGTGGTGGACACGGATAGCTCGATACTCCAAATGATGTCCGGTCAGAAACTGGTGTATGAGAACGGACACCTGGCATTGATGATGGATGATAATGATGATGATGGACAAGAAGATTCTAACGACGAAGAATCTCAAATAGAGTTACAAGTGTCGGGCGATGAAGAAACCGCCAACGCCATCATAGCGGCCGCGCAGGAACAAGGTGGTGCCTTTATTAAAGTAGAGAGTGGCGAGATGTACCGAGTTAAATCAGTACAGAGCAAGCCTTCGCAACCGAAGCCGGACGCGGCCACATTGCTCGTGGCAAGAGACGGAGACCAGTACAGGTGTTTGGTGTGTGATAATGCACGAGATAAAATAAAGAAATCCTTCAAATCCAATGCCGAAGATATGATGAAACACATGAAGAGTGAACACTTCGCCAAAGTGTACATTTGTGCCCTCTGCGGCGTGGTTATGAGGAGACGAACAGAATATGCCAGCCATATGGCGGAACACACCAAAAAGCTTTCAAACTCCACTCTCCCCAAGCCGCGAACATACGAATGCGAGAATTGCAGTAAATGCTACAACTCGCGGACCTTACTACAGGAACACATGAATCTGCATATGGGCAGGCGGCCTTACCAATGCCATATTTGTAATAAAGCCTTCGCCTCGAAATACTCCCGGCAAACGCATCTCAAGACGCATCAATTCCGACCGCGTCCATTCAAATGCGGCACTTGCGGAAAGAGCTTTCTTTCGCAAACGAATCTTAACCAACACGAGACCACACACACAGGCATCAAAAGTTTCGTCTGCAACATTTGTAATAAGGCCTTCGCTACACAACACAATCTGGAAGTGCACGGGGTAGTGCACAGCAAGGTGAAGAGTCACGTGTGTGAATTTTGTAATAAGGCCTTCGCCAGACGGGCCGAGGTACTAGACCATGTGAGGATACATACAGGGGAACGTCCATTTGAATGCGACGTGTGCGGGGCAAAGTTCTCTCAGCGCTCGAACCTGCACTCTCACAAGAGAGCCACTCATATGGACGACAGGCGCTATCCCTGCCCCGACTGTCCCAAGCGATTCAAACGGAGGAGACTGCTGGAGTACCACGTAAAGGCGGCGCACACGGGCGAGCGGCCGCTTAAGTGCGAAGAGTGTGGTTCTACGTTCGTGTACCCCGAGCATTACAAGAAACACCTTAAAATACACAGCGGGAAGAGGTCGTTCTTCTGCGAAATCTGCGGTAAGGCGTTCAGCTCGCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAACCGTACGAATGCCTCGCGTGCGGCGCCTCTTACATGCGGAAGCGCATGCTCGTCGCACACATGAACGCGCACGGTCATCTGGCTGAATCAATAGTCGTGAACCAGCCGAGGATATCAAAAGACAACGAAGACGGTCTTCAACGCACGTCGCCTGCGATAAGATTACTGGATGAAGATACAAGCTTGTCTAACGTATTAGGAAACTCAGTTGAAGCAGAGATAACTGAGAATGAGAATGAAAATGAAGATAACATGGAGGTTGAAAGTTTAGACGCATCCTCTATTTTAACGGCTGTTAGCTCCGGAGACCTCACACAAGAGGTGGTGGATGAGAATGGCAGCGTCGTGCGTTTCATACAAGTGCAAATGTCAGATGGCAACAGCGGATGGGTGGCGCTCAATGACTAA
- Protein Sequence
- MIGIQLERGSQDNMLCSDCYINCEDYDTYKTNMENLKIKIMEQYKKTIESNSTNLVVLKKTENPINVSPKKNKGFVVPSSKLQPVPADFQLNLDKIAAVTVANSKALTQKSLLNLKVTIGDSVLTQSLTGSTVQIAKPNIDLNSPINIGQPTRKLAQSSIKIVQPTGKISQPTIKIVQPTSKIAQPTMKIAQPSVKIVKATNKIAQPSNKEAQLSYKIVQSTSKIDQPTNKIEQPTNKIEQPTNKIDQPTLDTTEGTGIEWSVDFLHEDLFPHSNIKNNEGDDDNDNCDEDNDNDDEDNDNGDEDNDNDAEQNDDDNDKNEIKIDADWAADSPKTVPIVLDPNQIKSEDSDGTQYINAEDLMMGNIRILGEDGEQRKACADPELRLQCIPPRALQPSRLLTACVNRQYAPARAASDGLWRGAARTNTGRVKPSLDTIVVDTDSSILQMMSGQKLVYENGHLALMMDDNDDDGQEDSNDEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSKPSQPKPDAATLLVARDGDQYRCLVCDNARDKIKKSFKSNAEDMMKHMKSEHFAKVYICALCGVVMRRRTEYASHMAEHTKKLSNSTLPKPRTYECENCSKCYNSRTLLQEHMNLHMGRRPYQCHICNKAFASKYSRQTHLKTHQFRPRPFKCGTCGKSFLSQTNLNQHETTHTGIKSFVCNICNKAFATQHNLEVHGVVHSKVKSHVCEFCNKAFARRAEVLDHVRIHTGERPFECDVCGAKFSQRSNLHSHKRATHMDDRRYPCPDCPKRFKRRRLLEYHVKAAHTGERPLKCEECGSTFVYPEHYKKHLKIHSGKRSFFCEICGKAFSSRDNRNTHRFVHSDKKPYECLACGASYMRKRMLVAHMNAHGHLAESIVVNQPRISKDNEDGLQRTSPAIRLLDEDTSLSNVLGNSVEAEITENENENEDNMEVESLDASSILTAVSSGDLTQEVVDENGSVVRFIQVQMSDGNSGWVALND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -