Basic Information

Insect: Lobophora halterata
Gene Symbol: -
Assembly: GCA_932525835.1
Location: CAKOAV010000015.1:7458834-7467520[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.036 2.1 9.1 2.2 1 23 191 213 191 214 0.95

2 12 0.0016 0.092 13.4 0.9 1 23 223 245 223 245 0.97

3 12 0.018 1.1 10.1 2.5 2 23 251 272 250 272 0.96

4 12 6.7e-06 0.00039 20.8 0.1 1 23 278 300 278 300 0.97

5 12 7.3 4.3e+02 1.8 0.1 1 9 309 317 309 322 0.88

6 12 0.057 3.4 8.5 0.0 6 23 386 403 385 403 0.98

7 12 0.00063 0.037 14.6 9.3 1 23 408 430 408 430 0.99

8 12 1.4e-08 8.2e-07 29.3 0.8 1 23 436 458 436 458 0.99

9 12 2.3e-05 0.0013 19.2 1.6 1 23 464 486 464 486 0.98

10 12 1.7e-05 0.001 19.6 0.2 1 23 492 513 492 513 0.97

11 12 6.6e-05 0.0039 17.7 4.3 1 23 519 541 519 541 0.98

12 12 0.0037 0.21 12.2 0.3 1 23 547 569 547 569 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.036	2.1	9.1	2.2	1	23	191	213	191	214	0.95
2	12	0.0016	0.092	13.4	0.9	1	23	223	245	223	245	0.97
3	12	0.018	1.1	10.1	2.5	2	23	251	272	250	272	0.96
4	12	6.7e-06	0.00039	20.8	0.1	1	23	278	300	278	300	0.97
5	12	7.3	4.3e+02	1.8	0.1	1	9	309	317	309	322	0.88
6	12	0.057	3.4	8.5	0.0	6	23	386	403	385	403	0.98
7	12	0.00063	0.037	14.6	9.3	1	23	408	430	408	430	0.99
8	12	1.4e-08	8.2e-07	29.3	0.8	1	23	436	458	436	458	0.99
9	12	2.3e-05	0.0013	19.2	1.6	1	23	464	486	464	486	0.98
10	12	1.7e-05	0.001	19.6	0.2	1	23	492	513	492	513	0.97
11	12	6.6e-05	0.0039	17.7	4.3	1	23	519	541	519	541	0.98
12	12	0.0037	0.21	12.2	0.3	1	23	547	569	547	569	0.95

Sequence Information

Coding Sequence: ATGGAAACTATTAAAGAAATAAACCCTGGAAGCACCAAAGAAAACATACCAATAGAAATATCTATGGACTTATTGCAATATTTGAACTCACCAACATGTGACATGCAGCACATTTGCCGAGTTTGTCTTTCAATAGACAAGATTGAGCTTACAGTACCAGCAACAAACCTCAAGTATTCGGCTGAAATGTTCTTTGCACTGACCTCAATACAGCTCAACCAGGGAGATGGTTTACCTAGTCAACTTTGTACTGAATGCCAAACTGAAGTGATGCACTATTCCAAATTCAGGGATAAATGTGAAAAATCCGACCATTTGCTGAAATCTATCTTCAAAGGAGAACACCCTGTCAAAGTTGAGCCAAAGCATAATGTCACTTCTATGTCGGAAATTGATATTATAAAAGGTGATTTCAAATTTGAAGAAGTATCTGATGAATTTATAGACCATATAGATTATGAAGAAGACTATTCGGAAGACCTGAAAAACGTTTTAAGCGATGATGAAGCATTGTGCATTGTTCAGAACACAATGGAAAATGAAAAAAAAAGGATTAAACAAAAGTCAAAATATACCTGCAAACTGTGTTCTCAGGAATTTCCTAAACTAAAACTTGTGAAAGCTCATGAAAAGCAGCATCACATTGTGGCCATGAGGACTGAGCCGTTTCCATGCGCGCAGTGCAAGCTATCCTTTCATACTGAAAACGATCTCCAACTGCATCAGCTTATTCATAGCGAAGGGCCGTGGAAGTGCTTGGCATGTCAGAAACAATTCCAAGATAAGACGCGCTTCCGACGCCACATCCAGCGGCACATGGACGCGAAGCGGTTCGCGTGTGACGGCTGTGACAAGCGGTTCGCGGAGGCGTACGCGCTTCGCCGGCATGCGAGGGTGCACACCGGCGAGCAGGCTGAGAAAAAGCACGTGTGTGCTGAATGTGGGAAGAGACAACGGTCAGCTGATGGCACATCTGTCGCGGCACAGCGGCGTGCGGCCGTGCCAGTGCGGCGCGTGCGGCAAGGCGTTCCCCTCCCCGCGCCTGCTCGCCTCGCACGCGCGGGTGCACGCGCCCGCCAGCTACAAGTGCCGCTACTGCGACAAGCGGTAACTGCACAACCTCACATAGCATCTGAAGCTGACGGCACATCGGCGTGCCGCAAGGCGTTCCCCTCCCCGCGCCTGCTCGCCTCGCACGCGCGGGTGCACGCGCCCGCCAGCTACAAGTGCCGCTACTGCGACAAGCGTTTCCGACACGAGTCGTCGCGTAACACGCACCATCGTACCCACACGGGGGAGAAACCTTACGTGTGCTCCGTTTGCGGCAAAACGTTCATACAGAACTCCAATATGAGGCTGCATATGCGGACGCATACCGGCGAGAAACCGTATGCGTGTACGCACTGCGACGCAAAGTTTTCTTCAGGTTCGTCGCTCAAGAACCATGTGCGTTCGCACACTGGAGAACGCCCTTACAAGTGTCCCATTTGCGGGAAAGGTTTTGCCCGACTTAACTTAAAGGTGCATATGCGTCTACATTCTGGAGAGAAGCCGTTCACATGTAATATCTGTCCCAAGAAGTACGCGAACGCGTCGCATTTGCGCGAACACTGCCGCACTCACACAGGTGAAAGACCATTCGAATGTGCCAGGTGCGATGGCAAGTTCGCATCGAAAAAACTCCTGATAAAACACCTTGTTAACCATGAAATTAAAAAGTCTAAAAAGAAACAAAGATTACAAAACAAACAGAACATAATAAGTACAGTCCCGCCAAAGAATACCATTGATACTTTCAAAGTGCAAAGTATTGACACTTTCAAAGTTCAAAGTTTACCTGACACTTTTAAAATGCAAAGTTTGACTGATACTTTCAAAGTTCAAAGTTTAACTGACACTTTCAAAATTCAAAGTTTACCTGATACTTTCAAAGTACAAAGTTTGCCCGAGAACAAAATTCAAAGTATTTCTAATGAAATGGAGCAAGTGACAGACGAAATACCAAATGCCATTGTAGAGCTGACTTTAGGTACGCACGAAACATTCGACATGAGCCAAGAATTAGTGTTTCAGGATAATAATCTTAGGACACATGTGATAGTGCTTGGCAGCAATACGAATACAGTGAGTTTTATGAGCAATGACGTCGAAGGCTGCACCAGCGGGGTCAACATAGTGACTGTCAACGAAATAGGAGTCAGCATATCTGCAAACGATCCTGATAATAGTACATGA
Protein Sequence: METIKEINPGSTKENIPIEISMDLLQYLNSPTCDMQHICRVCLSIDKIELTVPATNLKYSAEMFFALTSIQLNQGDGLPSQLCTECQTEVMHYSKFRDKCEKSDHLLKSIFKGEHPVKVEPKHNVTSMSEIDIIKGDFKFEEVSDEFIDHIDYEEDYSEDLKNVLSDDEALCIVQNTMENEKKRIKQKSKYTCKLCSQEFPKLKLVKAHEKQHHIVAMRTEPFPCAQCKLSFHTENDLQLHQLIHSEGPWKCLACQKQFQDKTRFRRHIQRHMDAKRFACDGCDKRFAEAYALRRHARVHTGEQAEKKHVCAECGKRQRSADGTSVAAQRRAAVPVRRVRQGVPLPAPARLARAGARARQLQVPLLRQAVTAQPHIASEADGTSACRKAFPSPRLLASHARVHAPASYKCRYCDKRFRHESSRNTHHRTHTGEKPYVCSVCGKTFIQNSNMRLHMRTHTGEKPYACTHCDAKFSSGSSLKNHVRSHTGERPYKCPICGKGFARLNLKVHMRLHSGEKPFTCNICPKKYANASHLREHCRTHTGERPFECARCDGKFASKKLLIKHLVNHEIKKSKKKQRLQNKQNIISTVPPKNTIDTFKVQSIDTFKVQSLPDTFKMQSLTDTFKVQSLTDTFKIQSLPDTFKVQSLPENKIQSISNEMEQVTDEIPNAIVELTLGTHETFDMSQELVFQDNNLRTHVIVLGSNTNTVSFMSNDVEGCTSGVNIVTVNEIGVSISANDPDNST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -