Lhal015065.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000037.1:271543-276640[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00044 0.026 15.1 0.3 3 23 225 245 224 245 0.96 2 14 0.00017 0.0099 16.4 0.5 1 23 253 276 253 276 0.96 3 14 0.00025 0.015 15.9 3.4 2 23 283 304 282 304 0.97 4 14 0.0016 0.092 13.4 0.4 2 23 311 332 310 332 0.94 5 14 1.8e-06 0.00011 22.6 0.2 1 21 338 358 338 359 0.95 6 14 2e-05 0.0012 19.3 3.5 2 23 565 586 564 586 0.97 7 14 1.6e-05 0.00093 19.7 6.6 1 23 592 614 592 614 0.98 8 14 0.00085 0.05 14.2 0.6 2 23 624 646 623 646 0.95 9 14 0.00013 0.0078 16.8 3.5 1 23 655 677 655 677 0.97 10 14 3.9e-05 0.0023 18.4 0.1 1 23 683 705 683 705 0.98 11 14 0.0001 0.0061 17.1 0.7 2 23 712 733 711 733 0.97 12 14 0.00067 0.039 14.6 6.9 1 23 738 760 738 760 0.96 13 14 4.4e-05 0.0026 18.3 2.8 1 23 766 788 766 788 0.98 14 14 1.3e-06 7.4e-05 23.1 2.5 2 23 795 816 794 816 0.98
Sequence Information
- Coding Sequence
- ATGCAGAATCATTTGAAGCGATGTAAAAACTTTAAGGAGCCTCAAAAAAAACTTATGAAAAAGGTATGCAAAGTGAGATGCATTAAAAAAAATAATGAAGAAAAAAATGCATGTCATATTGAAAAATTGTTTGTGGAAAATAATGAGCCATTGCAAAAACCATTCAAAGTGCTATGGAAAGAAGAGGTGGACGAAACAACGGAATTCATTTATGAAACTTATGAACCAGAAAAAAATCCAAGCAAAATAAAAGTTGTACCAATAACCAATGATCCATTTGATGAACCAATTATTGAACTAAACGAAAAACCGAATGAACTAGCTGAACCACTTGTTGATCCATTTGATGACCCAATTATTGAACCTAAAGAAGAACCAAGTGATGAAATAACTATTGAACCTAAAGAAGAAATAATTGATAAATTAAGTATTGAACCGGATGAAGGACCAAGTGATGAATTAACTAAAGATGAACCAAGTGAAGAATTAACGAGAGATGAACAAAGTGAAGACTTCGCTTTAGAACCTAATGAAGAACCAAATAACGAATTAACTATTGAATCTAAAGATGAATCAATTTGTGAATCAAACATTAAATTATTTGTACAAAAAACTAGGGCTAAAAACCGAAGGAAAGCGAATAAACTCGCTAAGAAAAAAAAATCTGAAATCTGTGATCAATGTGGCCGCTCGTTCCCAACTAAAATTAGACTGTTAAAACACTTGGCTTACCACACTCGGGCAGAGAACTTTTCGTTCCCTTGTGATGTGTGTCCCAAGAAGTTTACTATAGAATGGAGATTGCAGAGACACATGAAACTAAAACATGGTGCAGTCACTAAGGTCACATGTCACAAATGTGGAAAAATATTGGCTTCAAAACTAAATTTGAAACATCACCTGAGACTACATGATAACGATAAGCCCTGTCAATGTGCACGGTGTGGGAAACGATTCGTGAATGCCGCGCGGCTCCGTCTACACGCTGCCGTCCACTTCGAAGAAAAACCACACGTTTGTCAAGGATGTGGCAGAGCATTTTCGCAGAAGGGCAATCTTAAGGCTCACCTGAAGTTATGTCGCAACTTTGTGGACTATTCAGAGAAAAACATCGCAATCCAAAGTCTAAACGACGCGCGACGATTGCGAACGCAAAAGGTTGTCGCACACCAAAATATAACTCCACACGGTTTGATTATAGAACCAAATATGAAACAGGACGAAGCAATCGATGAAATGGTACATAAAGATACACTTGACGTGATAGCACAAACGTTTGATGTTGAATTAAAAGAAGAAACGAACGATGAGCCTAAAAATGAAGTGATTGAGAACAGTCCCCGAGATAAAACATTCGAAGTCGGAATTAACGAAACATACAAACTAGAAATAACTATTGACAAAGATGAAGCATCTAACGACGGGCCATATTTCGACACTGGTGAACAGCACAACAGTAACTCATTTGGACACAGTTCTTCTCAAAACGAAGATAACGAAACTCTCAAAGAAGGAACCAAAAATGTAGATGATGATTCTACGAATGACACAAACGTTGAGCCAGAAGTGAACCTCGAAGATCCGTTAGATGAATCGGGTGAAGACACACGCCGTCAGGAAGAAACCAGTGACGTACCAGTCAGTAAGCCACCAAATGACAAACCTGATGTGAATGCTGTTTACCAAAGCCTTACCTGTGACGTTTGCGAGAAATCGTTCAAGTATCAATGCTCCTTAAAACTCCATATGAAAATGCACAGCGAAGGCAAAACACACCAATGTGAAAAATGCGGTCACGCGTTCCACCAAAAGTCTAACTTGAAAAGCCACCTGCGGATACACACAGGGGAAAACCTCGACCTCATTATCTCTTGCCAAAGTTGCCCTAGAAGATTCCCTAATAAAAAAAGATTGAATGAACATATAAAATCAGCTCACAGTAAATCGCAGCCAGGCGAAAGACACGTTTGTCTCGACTGTGGAAAGTCTTACAAAGCGTGTAATTCTTTAAAAATTCATATGCGAAATCATACAGGAGAAAGGCCTTACATTTGCTCCGCTTGCGGACGAGGTTTTACAAAAGGCGGCTTACTAAAAGTCCATATGAGAACTCATACAAATGAAGGCAAAGTAGAGTGTGATCAATGTGGTAAGAGTTGCGCCAATAAGCTGGTGTTACAAAGACATATCCTCACTCACGGGGAGAAAAACCACGCGTGTCATCTTTGTGATAAAAAATTCTCTAGGAAAGATCTTTTGGATACGCATTTGCATCGCCACTCGGGAATCAAACCGCATAAATGTAAATTATGCGAAAAGTCGTTTGCTTTCACTAACAGCTTGAATCGTCACATGGAGGTGCACGCTGATGTGCAACCTCAAAAATGCGAAATATGCAATAAAGTATTTCGTCGCAACAGATATTATAAAAAACACATGCAGATTCACAATAAATCTAAACAAAAGAATAAAACGTAG
- Protein Sequence
- MQNHLKRCKNFKEPQKKLMKKVCKVRCIKKNNEEKNACHIEKLFVENNEPLQKPFKVLWKEEVDETTEFIYETYEPEKNPSKIKVVPITNDPFDEPIIELNEKPNELAEPLVDPFDDPIIEPKEEPSDEITIEPKEEIIDKLSIEPDEGPSDELTKDEPSEELTRDEQSEDFALEPNEEPNNELTIESKDESICESNIKLFVQKTRAKNRRKANKLAKKKKSEICDQCGRSFPTKIRLLKHLAYHTRAENFSFPCDVCPKKFTIEWRLQRHMKLKHGAVTKVTCHKCGKILASKLNLKHHLRLHDNDKPCQCARCGKRFVNAARLRLHAAVHFEEKPHVCQGCGRAFSQKGNLKAHLKLCRNFVDYSEKNIAIQSLNDARRLRTQKVVAHQNITPHGLIIEPNMKQDEAIDEMVHKDTLDVIAQTFDVELKEETNDEPKNEVIENSPRDKTFEVGINETYKLEITIDKDEASNDGPYFDTGEQHNSNSFGHSSSQNEDNETLKEGTKNVDDDSTNDTNVEPEVNLEDPLDESGEDTRRQEETSDVPVSKPPNDKPDVNAVYQSLTCDVCEKSFKYQCSLKLHMKMHSEGKTHQCEKCGHAFHQKSNLKSHLRIHTGENLDLIISCQSCPRRFPNKKRLNEHIKSAHSKSQPGERHVCLDCGKSYKACNSLKIHMRNHTGERPYICSACGRGFTKGGLLKVHMRTHTNEGKVECDQCGKSCANKLVLQRHILTHGEKNHACHLCDKKFSRKDLLDTHLHRHSGIKPHKCKLCEKSFAFTNSLNRHMEVHADVQPQKCEICNKVFRRNRYYKKHMQIHNKSKQKNKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -