Lhal015068.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000037.1:299677-307301[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 4.6e-05 0.0027 18.2 2.0 1 23 98 120 98 121 0.95 2 35 0.00076 0.044 14.4 0.8 1 23 155 177 155 177 0.97 3 35 0.09 5.3 7.9 1.6 1 23 194 217 194 217 0.97 4 35 0.0018 0.1 13.2 0.7 2 21 222 241 221 242 0.93 5 35 0.00019 0.011 16.3 0.3 1 23 282 304 282 304 0.98 6 35 0.85 50 4.8 0.4 5 21 313 329 312 330 0.93 7 35 0.055 3.2 8.5 0.2 2 23 597 620 596 620 0.94 8 35 0.0007 0.041 14.5 0.2 1 23 628 651 628 651 0.95 9 35 0.0004 0.023 15.3 2.4 1 23 694 716 694 717 0.95 10 35 0.97 57 4.6 2.0 2 23 724 745 723 745 0.96 11 35 6.1e-05 0.0036 17.8 1.2 1 23 755 777 755 777 0.98 12 35 0.011 0.65 10.7 0.5 1 21 780 800 780 804 0.92 13 35 0.0034 0.2 12.3 0.4 1 23 813 836 813 836 0.94 14 35 1.5 86 4.1 0.9 2 23 842 863 841 863 0.96 15 35 0.0017 0.097 13.3 1.5 2 23 936 958 935 958 0.93 16 35 0.0011 0.066 13.9 1.1 1 23 966 989 966 989 0.95 17 35 0.0012 0.069 13.8 0.1 2 23 1004 1026 1003 1026 0.94 18 35 0.00022 0.013 16.1 4.3 1 23 1032 1054 1032 1055 0.95 19 35 0.46 27 5.6 1.6 2 23 1062 1083 1061 1083 0.96 20 35 1.7e-05 0.00098 19.6 1.3 1 23 1093 1115 1093 1115 0.98 21 35 0.011 0.65 10.7 0.5 1 21 1118 1138 1118 1142 0.92 22 35 0.0067 0.39 11.4 0.4 1 23 1151 1174 1151 1174 0.94 23 35 1.5 86 4.1 0.9 2 23 1180 1201 1179 1201 0.96 24 35 0.00045 0.026 15.1 3.7 2 23 1229 1250 1228 1250 0.97 25 35 0.091 5.3 7.8 1.3 2 23 1257 1278 1256 1278 0.93 26 35 4.3e-06 0.00025 21.5 0.2 1 21 1284 1304 1284 1305 0.95 27 35 8.1e-06 0.00047 20.6 2.0 2 23 1513 1534 1512 1534 0.97 28 35 3.7e-05 0.0022 18.5 6.6 1 23 1540 1562 1540 1562 0.98 29 35 2.1 1.2e+02 3.5 0.1 6 23 1576 1594 1574 1594 0.95 30 35 5.6e-05 0.0033 18.0 2.5 1 23 1603 1625 1603 1625 0.97 31 35 5.4e-08 3.2e-06 27.4 0.7 1 23 1631 1653 1631 1653 0.99 32 35 0.00013 0.0078 16.8 1.0 2 23 1660 1681 1659 1681 0.97 33 35 2.4 1.4e+02 3.4 5.9 1 23 1686 1708 1686 1708 0.96 34 35 1.3e-05 0.00078 19.9 1.8 1 23 1714 1736 1714 1736 0.97 35 35 0.00034 0.02 15.5 0.5 2 23 1743 1764 1742 1764 0.97
Sequence Information
- Coding Sequence
- ATGTTCTTCCGGCTATTCTTCAACTTGAACCAAATGCAATATTCAATGCTCGTGAAGCGTCGCAAGCTAACGGATATCCCTTTCATCAATGTACCTAAACCAGAACCTTCGGATATTACAGAAATAAGTTCATCAGTGTTTTCAGACGTACCACCGAAGAACACTAGGATAGAATATCAAAATTCATCAAAGATGGTTTTAGAAGATAATCAAAATGAAACCAAACATGATGATAATGAAGATAAAAACTCCAGTGATAATAACTTGAAAAAAATTTCCTCAAAAAGGCCATTTCCATGCAAAATATGCCATGAATCATTTTCTACCCCTATTAGTTTGAGTATCCATTTAAAATTACACCATCCGGAAGAAAACCATCTCGCTTGCAACCGATGCGATGAAGTCATGATAGGAATGACTATGTGGAAGAGGCATGTCAACGAGCACATTGTTGTGAAACCGTTCAAATGCACCGTATGTCCAAGTGCATTCACAGAAACTCGTTCTTTAAACAGACACATGACGCTTCACTCACAAATCAAAGAACTAGTCCCGGATAAAAGTCCAGACACACAAAAGTATGAGTGCGGTGAGTGTTGTAATGCATTTATACATAAAGGAAAATTAATGGCACACATGACAAGAGTACATAAAGCTAAATTATCCTGTCCTTACTGCCATAAATACTTCAGTAAGATTAGAAAGTTACAAATTCATATGGCATCGAAGGTTTACTGCAAAAAGTTGCCGAAGGTTGAAACGGTATCTAGAATTTGTGGGAAAGTCATAACTCGGACTGTAAACATGGATCTGTACTTGAAATTACATGCTGATGATAAACCGTACATGTGTAGGTATTGTGGTGAACGGTTTGCTGTACCCACAAAATTGAAGTTGCATCAACTAATCCACACTGGAGGAAAGCCATTTATTTGTGAGTGTGGTAAGTCATATATACTGAAAAGAAGTATGCAGAGTCATTTGAAGCGATGTAAAGACTTGAAGGAGTCTCAAATAATACTTAAGGAAAAGAAAAGTATAGTGAAACAAGTTAAAAATAATAAAATAGAGAAAGATGCAAGTCATGTTGAAAAATTGATTGTGGAAAATAAGGAGCCATTGCAAGAACCATACAAAGTGCGATGGAAAGAAGAGGTGGACGAAACAACGGAATTCATTTATGAAACTTATGAACCAGAAAAAAATCTGAGCAAAATAAAAGTTGAACCACTAACCTATGATCCATTTGATGAACCAATTATTGAACAAAACATAGAACCGAATGAATCAGCTGAACTACTTATTGATCCATTTGATGACCCAATTACTGAACCTAAAGAAGAGATAAGTGATGAAATAACTATTGAACCTAAAGAAGAACTAAATGATGAATTATGTATGGAATTTGATGAAGAACCAAGCGATCAATTAACTAAAGATGAACCAAGTTACGAAGTAATTAGAGATGAGCCAAGTGAATTAACTAAAGAAATAACTATTCAACCTAAAAAAGAACTAAATGATGAATTAAGTTTTGAATCTGATGAAGAACCAAGTAATCAATTAACTAAAGAAGAACCAAGTGACGAATTTACTTACGAAGAACTAAGTGAATTAACTAAAGATGAACTAAGTGATGACTTAACTGTAGCACCTAGAGAAGAACCAAATAAAAAATTAACTATTGAATATAAAAATAAACCCATTTTTGAATCAACCGACAAATCAATTGTAAAAAAAATAACTTCTAAAAAACGAGGGAAAATGAATAAACTTGCTAATAAAGTGAAATGCAAAATCTATCAATGTGGTCGCTCTTTCCCAACGAAAATTATACTGTTAAAACACTTGGCTTACCACACTCGGGCAGAACGCTTCCGGTTCCCTTGTGATGTGTGTCCCAAGAAGTTTGACGTAAAATGGAGATTGCAGAGACACGTGAAACTTATACATGGTCTACATTACAAAATAATTAAAAAAAAGGAATGTGTTCTTAAATGTCAAGCTTGCCAAGACTCCTTCGCTGGTGACGATAGCCTAGAAGTTCATGTGATGGAAATGCATCCGGAGCTAAGCATATACCCTTGCAAACGATGTCCGTCAAGCTTCTCAAACAGCCTCAACTTAAAAAAACACGTGATAAAACACCACCCTGATTTAAACCCATTGGAATGTAATAAATGCAAACATATTTCGGGAAAATTTAGCAACTGGAAAATGCACCTAATAACGCACTTGGAATCGGAAAAGAAACCGAAACCTTTCATTTGTGATTACTGTTCAAGGCAATTTACTGAGAAAGGCGGTTTGAAAAACCACTTGAAAACTCACATTGAATTTAAGTGTGCAGTGTGTTGGGAATCGTTTATGGACAAGATTTCATTTAGAGCTCACAGAAAAGCCTCCAAACATTATGGACGAGCCTCAAGTACGAATCACATTTGTGATGCGTGCGGACAAGCGTATAAAAACAAAGCAGGTTTAAAAATCCACCTCGAGAAATTCCACACACCCCTTGAAAGCACTTGCGACGTTTGCGGCGAAAAACTATTTGATAAGTTTCAGGAAAGGGTACATCAGAAACGCCATATAATTCCTAAGCCTAAGAAAAAACCAAATAACGAATTAACTATTAAATCTAAAGAAAATTCATCAACCGATAAAGCATTTGTAAAAAAAAACAGTGATAAAAAACGAGGGAAAGCGAATAAACTTGCTAATAAAGTAAAATGCGAAATTTGTGATCTACAGTTTTGTGACAGATACATCAAAACACATATGAAGCGGCACAAAACTAAATTCGTTAAGTGTGATCAATGTGACCGCTCATTCGTGACTAAAATGAAACTGTTAGAACATCAGCACGCTTCGCACAGTCCGACAGAGCGCTTTCCGTTCTTTTGTGACGTTTGTCCCAAGAAGTTCACCATAGAATGGAGATTGCAGAGACATATGAAACTTAAACATGGTCAAAGATGCAAAATAATAAAACAAAAGACATTTGATCTGAAATGTGAAACTTGCCAAGAATCCTTCGATGATGAAGATAGTCTAGAAGCTCACGTGATGGAAATGCATCCGGAGCTAAGCATATACCCTTGCAAACGATGTCCGTCAAGCTTCTCAAACAGCCACAACTTAAACAAACACGTGATAAAACATCACCCTGATTTAAACCCATTGGAATGTAATAAATGCAAACATATTTCGGGAAAATTTAGCAACTGGAAAGTGCACCTAATAACGCACTTGGAATCGGAAAAGAAACCGAAACCTTTCATTTGTGATTACTGTTCAAGACAATTTACTGAGAAAGGCGGTTTGAAAAACCACATGAAAACTCACATTGAATTTAAGTGTGCAGTGTGTTGGGAATCGTTTATGGACAAGATTTCATTCAGAGCTCACAGAAAAGCCTCCAAACATTATGGACGAGCCTCAAGTACGAATCACATTTGTGATGCGTGCGGACAAGGGTATAAAAACAAAGCAGGTTTAAAAATCCACCTCGAAAAATTCCACACACCCCTTGAAAGTACTTGCGACGTTTGCGGTGAAAAACTATTTGATAAGTTTCAGGAAAGGGTACATCAGAAACGGCATTCAATGCCTAAAATAAAAGTGAATAACGATAACACTGCGGTCCACAGATATAAATATATCTGTGCTGCGGTCACTAAGATCAAATGCCACAAATGTGGAAAAATATTGGCTTCAAAACTAAATTTGAAACATCACCTGCGACTGCATGATAACGATAAGCCCTGTCAATGTGCACGGTGTGGGAAACGATTTGTGAATGTCGGGCGGCTCCATCTACACGCTGCCGTCCACTTCGAAGAAAAACCGCACGTTTGTCAAGGATGTGGCAGAGCATTCTCGCAGAAGGGCAATCTTAAGGCTCACCTGAAGTTATGTCGCAAGTTTGTTGATTATTCAGCGAAAATCATCGCAATCCAAAGTCTAAACGACGCGCGACGATTACGAACGCGAAAGGTTGTCGCACACGAAAATATAACTCCACATCGTACGATTATAGAACCAAATTTGAAACAGGACGAAGCAATCGATGGAATAGTACATAAAGAAGATACACTTGACGTGATAGCACAAACGTTTGATGTTGAATTCAAAGAAGAAACAAACGATGAGCCTAAAAATGAAGTGATTGAGAGCAGTCCCCGAAATAAAACATTCGAAGTCGGAATTGACGAAACATACAAACTAGAAATAACTATTGACAAAGATGAAGCATCTAACGACGGTTCATATTTCGACCCTGGCGAACAGCATAACAGTAACGCATTTGAACACAGTTCTTCTCATAACGAAGATAATGAAACTCTCAAAGAAGTAACCAAAGAGGAAGATGAAGATTCTATGAATGACACAAACGTTGGGCCAGAAGTGAACCTCGAAGATCCGCTAGATGAATCGGGCGAAGATACACGCCGTCAGGAAGAAACCAGTGTCGTACCAGTCGGGAGTAAGCCACTAACTGACAAACCTGATGTGAATGCTGTTCAACAAAGCCTTACCTGTGACGTTTGCGACAAACTGTTCAAGAGTCGAACCACTTTGAAACGCCATATGAAAATGCACAGCGAAGGCAAAACACACCAATGTGAAAAATGCGGCCACGCGTTCCACCAAAAGTCTAACTTGAAAAGCCACCTGCGAATACACACGGGGGATAAATTAGGCCACATTATCTCTCGCCAAAGTTGCCCTAGAAGATTCCCTGATATTATGAGGCTGAATGAACATATAAAGTCAACTCACAATAAATTGCAGCCAGGCGAAAGACACGTTTGTCTCGATTGCGGAAAGTCTTACAAAGAATACAAATATTTGAAAATTCATATGCGAAATCATACAGGAGAAAGGCCATACGTTTGCTCCGTATGCGGACGAGGTTTTACAAGAAGTAGCAAGCTAAACGACCATATGAGAACTCACACAAATGAAGGCAAAGTAGAGTGTGATCAATGTGGTAAGAGTTGCGCCAGCAAGCTGTCGTTATATCGACATATCCTCACTCACGGGGAGAAAAACCACGCGTGTCATCTTTGTGAGAAAAAATATTGGAGGAAAGATCTTTTGGACACGCATTTGCATCGCCACTCGGGAATCAAACCGCATAAATGTAAAATATGCGAAAAGTCGTTTGCTTTCGCTAACACTTTGAATCGTCACATGGATGTGCACGCTGATGTGCAACCTCAAACATGCGAAATATGCTATAAAGTTTTTGGTCTCAACAGATATTTAAAAAAGCACATGCTGATTCATATGAAATCAAAACAAAAGAAAAAAACTTAG
- Protein Sequence
- MFFRLFFNLNQMQYSMLVKRRKLTDIPFINVPKPEPSDITEISSSVFSDVPPKNTRIEYQNSSKMVLEDNQNETKHDDNEDKNSSDNNLKKISSKRPFPCKICHESFSTPISLSIHLKLHHPEENHLACNRCDEVMIGMTMWKRHVNEHIVVKPFKCTVCPSAFTETRSLNRHMTLHSQIKELVPDKSPDTQKYECGECCNAFIHKGKLMAHMTRVHKAKLSCPYCHKYFSKIRKLQIHMASKVYCKKLPKVETVSRICGKVITRTVNMDLYLKLHADDKPYMCRYCGERFAVPTKLKLHQLIHTGGKPFICECGKSYILKRSMQSHLKRCKDLKESQIILKEKKSIVKQVKNNKIEKDASHVEKLIVENKEPLQEPYKVRWKEEVDETTEFIYETYEPEKNLSKIKVEPLTYDPFDEPIIEQNIEPNESAELLIDPFDDPITEPKEEISDEITIEPKEELNDELCMEFDEEPSDQLTKDEPSYEVIRDEPSELTKEITIQPKKELNDELSFESDEEPSNQLTKEEPSDEFTYEELSELTKDELSDDLTVAPREEPNKKLTIEYKNKPIFESTDKSIVKKITSKKRGKMNKLANKVKCKIYQCGRSFPTKIILLKHLAYHTRAERFRFPCDVCPKKFDVKWRLQRHVKLIHGLHYKIIKKKECVLKCQACQDSFAGDDSLEVHVMEMHPELSIYPCKRCPSSFSNSLNLKKHVIKHHPDLNPLECNKCKHISGKFSNWKMHLITHLESEKKPKPFICDYCSRQFTEKGGLKNHLKTHIEFKCAVCWESFMDKISFRAHRKASKHYGRASSTNHICDACGQAYKNKAGLKIHLEKFHTPLESTCDVCGEKLFDKFQERVHQKRHIIPKPKKKPNNELTIKSKENSSTDKAFVKKNSDKKRGKANKLANKVKCEICDLQFCDRYIKTHMKRHKTKFVKCDQCDRSFVTKMKLLEHQHASHSPTERFPFFCDVCPKKFTIEWRLQRHMKLKHGQRCKIIKQKTFDLKCETCQESFDDEDSLEAHVMEMHPELSIYPCKRCPSSFSNSHNLNKHVIKHHPDLNPLECNKCKHISGKFSNWKVHLITHLESEKKPKPFICDYCSRQFTEKGGLKNHMKTHIEFKCAVCWESFMDKISFRAHRKASKHYGRASSTNHICDACGQGYKNKAGLKIHLEKFHTPLESTCDVCGEKLFDKFQERVHQKRHSMPKIKVNNDNTAVHRYKYICAAVTKIKCHKCGKILASKLNLKHHLRLHDNDKPCQCARCGKRFVNVGRLHLHAAVHFEEKPHVCQGCGRAFSQKGNLKAHLKLCRKFVDYSAKIIAIQSLNDARRLRTRKVVAHENITPHRTIIEPNLKQDEAIDGIVHKEDTLDVIAQTFDVEFKEETNDEPKNEVIESSPRNKTFEVGIDETYKLEITIDKDEASNDGSYFDPGEQHNSNAFEHSSSHNEDNETLKEVTKEEDEDSMNDTNVGPEVNLEDPLDESGEDTRRQEETSVVPVGSKPLTDKPDVNAVQQSLTCDVCDKLFKSRTTLKRHMKMHSEGKTHQCEKCGHAFHQKSNLKSHLRIHTGDKLGHIISRQSCPRRFPDIMRLNEHIKSTHNKLQPGERHVCLDCGKSYKEYKYLKIHMRNHTGERPYVCSVCGRGFTRSSKLNDHMRTHTNEGKVECDQCGKSCASKLSLYRHILTHGEKNHACHLCEKKYWRKDLLDTHLHRHSGIKPHKCKICEKSFAFANTLNRHMDVHADVQPQTCEICYKVFGLNRYLKKHMLIHMKSKQKKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -