Lhal017809.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000047.1:2569922-2571511[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.25 4.1e+02 1.2 0.1 18 29 46 57 42 69 0.77 2 10 0.028 46 4.3 0.1 18 40 176 195 169 197 0.87 3 10 0.33 5.5e+02 0.8 1.2 18 28 204 214 200 225 0.78 4 10 8.4e-05 0.14 12.3 2.4 13 40 227 251 217 254 0.81 5 10 0.013 21 5.4 3.4 6 40 249 279 248 282 0.82 6 10 0.036 59 3.9 5.9 2 39 273 306 272 310 0.83 7 10 0.0012 1.9 8.7 2.3 2 39 301 334 300 338 0.87 8 10 6.6e-06 0.011 15.9 3.2 2 40 329 363 328 366 0.93 9 10 0.36 6e+02 0.7 2.1 15 39 369 390 364 393 0.75 10 10 0.00083 1.4 9.2 2.8 2 41 385 420 384 421 0.88
Sequence Information
- Coding Sequence
- ATGTCTGCCTCCGTGTGTAGAGTGTGTTTGTGCGGCGATGTGAGAATGCACAGCATTGAGGGCAACAACCTTGTCGAGATATACGAGACAATGTCGGGGAGCAAGCTGAACACAGAGGATGGGCGGCCCACAACGGTGTGCTACATTTGTGTCTCGCAGCTGCGGAGAAGCCGCCGTTTCTCAGACAGGGCTCATGAGACTGAAAGAACCCTGACACAGCGGTACCACCACGGTATTGAGGTGCCGTGCAATGCCGGCACTGTGCTGGACCCGGCTGCCACTCATAACCTGACTGTGACGGCTCTACCACACTTGGATGTAATACATTACTCAAGGAAAATGAGGTGTCCAGTGAAAGTTGTGAAGGAAGAAGCAGTAGTTGTGAAGGAAGAATCAGTTGAAGATGAAGATCTGATTGATACTGAAGAGAGTAGACTTGTTGACATCGGGGAGAGTGCGCTTGATGATGATGATGTGGGAAGCTGTCGGGATACAGAGCATCTCGTGTCGGAAAGTCTGTATCTGTAttgtgatgtatgtaacaaagcacttggttccaaacagagcctgatcagacatttggaaggtcatggaggatcaaggccatatacctgcaatagatgcaacaaggctttcaaactagctggaaatttaaaaatacacatgttcatccatactggggaaaagccttacgtttgtaatcactgtaacaaggctttcaaccaagctggaaatttaagtcgacacatgcgcattcatactggggaaaagccatttgtttgtaataaatgtaatgaggcattctacctagttagaaatttaaaacgtcacatgcgcattcatactggaaaaaagcaatttgtttgtaataaatgtaatgagattttctacctagctggaaatttaaaacgacacatgctcattcatactggggaaaagccttacgtttgtaatcaatgtaataaggctttcagccaagctgcaaatttaaaacaacacatgctcattcatactggggaaaagtcttacgtttgtaataaatgtaatgaggcattctaccgagttaaaaatttaaaacgtcacatgcgcattcatactggaaaaaagcaatttgtttgtaataaatgtaatgacgctttctacctagctggaaatttaaaacgacacatgctcattcatactggggaaaagccttacgtttgtaatcaatgtaaaaagagtttcaaccaagctgcaaatttaaaacaacacatgcgcactcatactggggaaaagccataa
- Protein Sequence
- MSASVCRVCLCGDVRMHSIEGNNLVEIYETMSGSKLNTEDGRPTTVCYICVSQLRRSRRFSDRAHETERTLTQRYHHGIEVPCNAGTVLDPAATHNLTVTALPHLDVIHYSRKMRCPVKVVKEEAVVVKEESVEDEDLIDTEESRLVDIGESALDDDDVGSCRDTEHLVSESLYLYCDVCNKALGSKQSLIRHLEGHGGSRPYTCNRCNKAFKLAGNLKIHMFIHTGEKPYVCNHCNKAFNQAGNLSRHMRIHTGEKPFVCNKCNEAFYLVRNLKRHMRIHTGKKQFVCNKCNEIFYLAGNLKRHMLIHTGEKPYVCNQCNKAFSQAANLKQHMLIHTGEKSYVCNKCNEAFYRVKNLKRHMRIHTGKKQFVCNKCNDAFYLAGNLKRHMLIHTGEKPYVCNQCKKSFNQAANLKQHMRTHTGEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909879;
- 90% Identity
- iTF_00909879;
- 80% Identity
- iTF_00909879;