Lhal017677.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000047.1:1026342-1032940[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-09 1.2e-05 25.1 0.2 1 34 224 257 224 262 0.92
Sequence Information
- Coding Sequence
- ATGGGAAAAGAAGCTGGCTATGAGATCGAGACGTTTTTTGGAAAGTGCAAATGCTGCCTCAAATATGGCTACCTCAGAACGATGTGGGAGAAGCATTATGTGGACGGAGTGAACGAAGTTTACGGGCAAATGTTGACGCAATGTTTTTCCATATCGTGGACCATGCAAAGCTCGGAGAGTGATGACCAAATTTGTGAAGAGTGTGTTAGTAAGCTCCGGGATGCCATCGCTTTCAAGAAACAGGTGTTGAGGAGTCAGCAGGAATTAGCTGGTGATGAAGGAGTAGAATTTGAGACAAAGGATAATGACTCAAAACAAGATCCTGCAAACTATTACGTAGAATACTTAGATGAAGAACTATTAGACAAGAAGGAACAGAGTTTTAATGATGGAGAGATAAATAGTGAAGAGGGTTTGAATGAGGGAGAGATAAATAGTGAAGAGGGTTTGAATGAAGGAGATAGCGATGGTGATGACAGATTTGATGATGATTTCAATGGAAATGATGAGGATACACAACCAGATGATGGAGAATCAGACGAACCAGATTCTCCAGGCCCTAGAAAACGTTCAAAACCAAAATCAGCCAATGACAGCGAAGATGAACCGAAACCAAAATGGCCGAAAAAGCTACCCCTCATTGAAAGATACAAGACATATAAACAGTATACGGAACAGGACTTGAAGAAGGCAGCGGACGCGGTGATATCAAAACAGATGAATCAAAAGGAAGCCGCTAAAGCTTATCACGTGCCGCGGAAGACTTTGGCAGCCAAGATCCGAGCTGTTAAAGATGGAGTATGCACTGATGACGACATTGATGAACCGTCAGAGAAAGCAAATGACGATACAGAGGCCGCAACAGAAAAAATGGACGATCCAACAGAGAAAGAGGACGATCCAAAAGAGATAAAAGACGAAACTGACTATGCTCCGGAGATACAAGACGATCCTGGTAATCAATCAGAGAAAAAAGACGCTTCTGACGATGACAGAGAGAATCGTGAAGAATCGCAAGATGACGATGCTGTGGTCATCATAAAGAAACACAGGGATAATATACATTCAGTGCTCGCATACTCCAATGCGACTCCAATCAGAGGCTTCTGGGGTAAAGGTTATGTTTGTGCGTTCTGTGCGGACCAATTTGACCACCCAGCTCTCCTCAGAACCCACACAAGAACACACGGAAACATCGCAGATTTATATCAAGTCAAGCATGTCCGCGCATACATAgccagactggatgtgacgtcactcaagaagagaactacccacgaaagaTACAACCACAAAGTTGTAGTCGGCCCGTACAAGTGTTCTTTTTGCAAAAAACAATTCCCCAACGAAGACCAAAGAGACGAACACGAAGATAGAACTCACAGGAAACTGGTGATGGACTACAATTGCAAAGAGTGTGAAAAAAGTTACGTTTCAAGGCGTTCGTTACGCGCACATGTGTTGAACGCGCATTTAAAACAACGTTCGTACAAATGTCCCGAAAAGGGATGTGGAAAATCCTTCTTTAACAACAAAGTGTTGAAGGACCATATAATGACACATCTCGGTGCGACTTTCTTCTGCCCGGAGTGTCCTAGAGTGTACAGAACCCCTAAATCCTTGCGGGCGCATATGTATGTACATACTGATAAAAAAGGATTCAAATGTTTGTTGTGCAACAAAGCCTTTGTCTTGAAAGAAAACTTAGAACTGCACATGCAAAATAAACATTTTGTTAAACCCGTTGAAGATAGTAAAAAGTCGTAA
- Protein Sequence
- MGKEAGYEIETFFGKCKCCLKYGYLRTMWEKHYVDGVNEVYGQMLTQCFSISWTMQSSESDDQICEECVSKLRDAIAFKKQVLRSQQELAGDEGVEFETKDNDSKQDPANYYVEYLDEELLDKKEQSFNDGEINSEEGLNEGEINSEEGLNEGDSDGDDRFDDDFNGNDEDTQPDDGESDEPDSPGPRKRSKPKSANDSEDEPKPKWPKKLPLIERYKTYKQYTEQDLKKAADAVISKQMNQKEAAKAYHVPRKTLAAKIRAVKDGVCTDDDIDEPSEKANDDTEAATEKMDDPTEKEDDPKEIKDETDYAPEIQDDPGNQSEKKDASDDDRENREESQDDDAVVIIKKHRDNIHSVLAYSNATPIRGFWGKGYVCAFCADQFDHPALLRTHTRTHGNIADLYQVKHVRAYIARLDVTSLKKRTTHERYNHKVVVGPYKCSFCKKQFPNEDQRDEHEDRTHRKLVMDYNCKECEKSYVSRRSLRAHVLNAHLKQRSYKCPEKGCGKSFFNNKVLKDHIMTHLGATFFCPECPRVYRTPKSLRAHMYVHTDKKGFKCLLCNKAFVLKENLELHMQNKHFVKPVEDSKKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910000;
- 90% Identity
- iTF_00910000;
- 80% Identity
- iTF_00910000;