Lhal006701.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000014.1:10663953-10671883[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.2e-11 1.2e-07 31.4 0.0 4 38 142 177 139 182 0.90 2 4 7.1e-13 1.4e-09 37.6 0.3 2 39 194 231 193 234 0.93 3 4 2.1e-16 4.1e-13 49.0 0.2 2 45 249 293 248 293 0.96 4 4 1.2e-17 2.3e-14 53.0 0.0 2 44 301 344 300 345 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGTTCGGGAAATGCTGCCGTGAAATGTGAGCCTCCGTCTGACGAAGAAGACAACATTCCTCAACTGCCCGAAATATTTATTAATAGCTCGGTAATTACGGGTTCGGGATGCCTGGAAGAGCTGGCTCCGCCGGCACCCGCAGGCCCGGCCGCCACCCCTGTGTGCGTCAAGCAGGAGCCCGGGGACACGTCCGCGCCGCATTTGGAGACCTTGCACTCCACCTCTTATACCACCGGCTCTCTATTGGAGAGACACATTGCGCTATTGAGGTCATCCGAAGTGCCGGACTCCGCTAATTTCACGCCGCTGCTACCGGTCAAGGACGAACCGTCTTCTGAAGGAGAACAGCAGCCTCTCAGCAACGATGAGTTGTGCGAGGCGCAGCCGCGCGGCAGTCCCAAGAGCTGGACGCAGCGCGACATGGAGCTCGCATTGCACGCGCTGCGGACGCACAACATGAGCCTCACTAAGGCATCAGCTACGTTCGGTATTCCGTCCACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCAACACGCCGAAGAAGGAAGGCGCCGCCAAGTCCTGGAGTGAGGGGGACCTGCGGGCCGCGCTGCACGCGCTGCGCGCCGGCGCCATCTCTGCCAACAAGGCCAGCAAGGCGTATGGCATCCCCAGCAGCACGCTGTACAAGATAGCGCGGCGTGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCTGTGGCGTGGCGGCGCGGCGACCTGGCGCGCGCGCTCGCCGCCATCCGCGCCGGTCGCGCCTCCGTGCAGCGCGCCGCTTCGCAGTACGGGATACCCACCGGTACTCTGTACGGGCGTTGTAAGCGGGAAGGCATCGAGCTCTCTCGATCTAATCCCACACCTTGGTCCGAAGGCGCCATGGGAGAAGCGCTAGAAGCTGTCAGAATCGGTCAGATGTCAATAAACCAGGCAGCCATACACTACAACTTGCCATATTCTTCACTTTACGGACGATTCAAGAGATGCAAATATCCAGCACAGCCTTTGCCGCAACAAGAAATGCAGAATCCTCCAGAGATGGCCAACCAGCATGAGAACTACTACCATCAAATGCCGATGTTCCATGACCAAGAGCATGCAGCGCATCCGCAGTACTCGAACGATTTCGTACAAGACCCATCTCAAGGCGTGTCAGACCCGTACTCGGCACAGGCCGTGTATTACAGCCAGAGCTTTAGTGGTATCGCCACCAGCTGA
- Protein Sequence
- MPGSGNAAVKCEPPSDEEDNIPQLPEIFINSSVITGSGCLEELAPPAPAGPAATPVCVKQEPGDTSAPHLETLHSTSYTTGSLLERHIALLRSSEVPDSANFTPLLPVKDEPSSEGEQQPLSNDELCEAQPRGSPKSWTQRDMELALHALRTHNMSLTKASATFGIPSTTLWQRAHRLGINTPKKEGAAKSWSEGDLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLARALAAIRAGRASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYPAQPLPQQEMQNPPEMANQHENYYHQMPMFHDQEHAAHPQYSNDFVQDPSQGVSDPYSAQAVYYSQSFSGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -