Lqua022327.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754902.1:2801902-2810136[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.92 62 4.8 4.7 1 23 286 311 286 311 0.94 2 14 0.0025 0.16 12.9 2.5 3 23 330 351 329 351 0.95 3 14 0.095 6.3 7.9 0.4 2 21 387 406 386 407 0.94 4 14 8.3 5.6e+02 1.8 2.9 1 23 725 746 725 746 0.93 5 14 3.6 2.4e+02 3.0 1.6 1 23 757 779 757 779 0.92 6 14 0.00088 0.059 14.3 0.0 2 23 785 806 784 806 0.96 7 14 0.17 11 7.2 0.3 1 23 828 849 828 849 0.95 8 14 0.0051 0.34 11.9 2.0 3 23 895 915 895 915 0.95 9 14 0.0014 0.094 13.7 3.5 2 23 931 952 930 952 0.97 10 14 2.7e-07 1.8e-05 25.4 2.5 1 23 958 980 958 980 0.98 11 14 0.00025 0.017 16.0 0.7 1 23 985 1007 985 1007 0.97 12 14 0.0034 0.23 12.5 0.7 2 23 1014 1036 1013 1036 0.96 13 14 0.14 9.2 7.4 0.3 1 19 1043 1061 1043 1062 0.87 14 14 1.8e-05 0.0012 19.6 1.2 3 23 1075 1096 1074 1096 0.95
Sequence Information
- Coding Sequence
- ATGTCAGAAATATCAATGAAACGATCTAGAAAATCGAAGTTGGAGCCTCGGAAATATGTGGATATTGACGATGAAAACACCACGGACTTGCAGGCAATGCCGAGTACATCAAAGAGTAAAAAGCATGAAAACAATGTTCCCCAACCACAAACAAGTCATCCAAACGAAGATTTTGAAGCTCTCATCGATTCACAGAAGGCAGAAAATCAATCCGCTCCAAAATTCTCCGTCACGGTAGCCATAGAAGAATGTGATGATAGCGACTCAGAACTCATGATCATAGAGCCAGAAAATAATACTATTGAGATACTCTCCGACTCCGATGATGATTATTCTATCAGTAAAAACTCACATACTAACGATTCAAATGACAAGGTTCTAGACGAATTAGTTGTAACCAGAGATCAAATACTGAAAGCGACTACCAAAATTATACAACAGTCAACGAATCCCGCAGACAAAATGCTCGGAATAGAAGTAAGAAATTGCATGGGACAGTTTGAAGTGAAACAGATTGACTACCACAGAGACAAACTAAATAAAGTATTCGTTCAGTGGCAAGCCTGGCAGAAAGTTATCACACAGGTGAAGCATAGAAGCTCTCCGTTGTTATACAAATGCTATATCTGTGAACTATCCTGGTGGTACCTTCACGACTTTCAAGAACATTTGAAATGTCACAAAGACTATAACCTAGATCTTGAAGAATACACTATATATGAAGCGAACGTAATAGCATATTTAAACGTTGAGGACATTGTAGACGTTAAACATTTCTACACTGAAGGTGACTGTCCGAAATGTGGGAACGAGTTCGCTATCCACAAATCTATTAACCGATCAAAAAATTACTTGTACAGCTGTAAAATCAAGAAGTGTTACAAGTTATTTAGTACATGCTTTGCTCTAAGAAGCCACGAATACATGTATCATACTATATCGGAGATAACCGGTGTACCGTTCGAAGTAGGAAGGCAAAACAAACATTGTGAGGTGTGCGGATTTGTGTTCCACTCGCAAGAATCGTACCAATCACATATGAATTTAATGCATAGTGTACGATCAGATGTAGTGGTTCCTGTTAAGTACTCAAAGTGTGCGCAGTGTAAATCGGAGTACGGTTGGCACCATGTTTGTCAAAAGTTATCAACTAAAGTGCAATGTAAGATGTGTTATAGGTCGTTTGCGAAGATGCAGGTATACCGAGCCCATATGAACAAAGGTGGTAAATACCAGTGTAAGTTGTGCGTTTGTAAACTACAGAGACAGTGTATGGAGACTGAACACTTGTTGCTAAAGCATTCGGACAATTTTGTAATCGTGAAAAAATGTGGAACGTGTGCAGATTTTAACGTGTTCCGTACTGATATAGCAGCGTATAAGCATATAGCGGAGCATTACAATATAGCTGAATACGACCAAAATTACTCCAAATATTGTCGTAATATACTAATTCCGAAGTCATGTTTAACAACAAAATTGAAGCCAAAGCAAAGCGTGGTCATTGAAGAAAAGCCGAAAGAAACGATACAAGTTGAAATTAAAAAGGAAGTATTAGAAACTATTGAGATTCACGCCAATGCAGTAACCATTGACaatcaaattaataatgaaGAAATTGATAATCAAGCACAAATCAATAATGAACAATCTGATAATCAACTTCCAATCAGTTATGAGGAATCTGATAATCAAGCTGCAATCAATAATGAAGAGTTTGATAATCAAATTCAAGTCAAAGAAGAAATCGATATAGTAGACAATTTTGATGCAGAAGTCTTAAAGCAAGCATATTCTAAAAAACTTGAAGAGGATGCTGAAACACATTCAAGAATTTTTGGCGTCAAAATCGAAGCAGCCGACATTGAGGTGAAGCAAGAGACAGAAGAAGAGTATGAGGATGATATTATAAAGCTAGATTATAGTTTCCTTGCAAATATGCAGCAATCTATGGATAGCGCCACAGAAGTGTATATAGAAGGAGTCTCTGAAATGCAAGAAACGGATGATAATATGCAAGAAACGGATGATAATATGCAAGAAACGGACGATAATATGCAAGAAACGGACGATAATATGCAAGAAACGGACGATAATATGCAAGAAATTGACGATGAAAGCGAAGATAGCAGTACGAAAGCAAGATGTAGAAAACATAGGCCACCTAAAATCTACCGATGTTCCAGATGTGGGTTCGATGCCACCCACAAAGAATACAGACTACACATAAAAAATCACTGCGAAGAACGTTTGTACGAGAGAGACTACTATCCTTGTACAAAGTGTTCGGTTCATTATGATACGTTTGAAAAATATATCGACCATTTTGTAGTACATAACCTCAGTCCGATGTCATGCCCCGAGTGTTACAAACCTTATGCAAACTATGAAGCGTTGCAAGCCCATTTAGCGTCACATATAAGGATGACTTTTATAACCGTTCCGTTGATACGGCCAACAAAGGAATCAGGGATGTACTATTATAGATGTAAATTGTGTGAAAAGATAGTTGACAAGGAGAATTTTTTAGTGCATTGGGAGTTACATTTGGCGTTTCTAGAGAGTAATGAGCGGGAGGAGGACGAGGATGATGAAAAATTAGGACCTGTTGATGATGACATGTTGCAGCAGTTGTTGGaacgCCTCCAATCCCCAGAACCCCTTTTCAAATTGAGAAGGGGATGTCCGATCTGTCGCAGACATTTTGACCGCAAGATGGACTACAAGCGCCACCTGGTGGAGCATTTATTGAACCACGCATACACCCAGCGCCCCGTGTACGCGGGGCTAAAGTGTCAGATTTGTTCGTTATGCTTTCAAAAAGCTGagcaatataaaaaacatatgAGGGATCATGGCAGTCTGAAAGATTATAGATGTGAGATTTGTGATAAGAGTTTTAGCGATTCGAGCAATTATACCAAACATAAGAAGTTACATAATGCCAATGCGTTCACTTGCGATATTTgtaagaagagatttcagatcAAGATTTCACTAGAAAAACATATGGCACTACATGTAAACCAGAAGCCAATAGAATGTCCGTCTTGTGACAAAGTCTTCCAACTAATGTCGTTATACAAGAAACATTCACGCACATACCATGAGAAAGAACGACTGAAATTCGCCTGCACGGTGTGCAAAAAGAGGTTTGTctctttaaaagaaaaatgggATCATTTATGGCAAGTCCATAAAGAGCGGAAGTACAAAGCCGATTGTCCGAAGTGCGACAAAACTTATAGGAGGTTTagagatttaaaaaatcatatgaaGGATGCGCATCGGGTGCATATCCATTATTTGGGTCAAAGGACCAAGCCCGATTTgaaagacattaaaaaaaaaatagcttctGTGAAATTGCCTCAAAAGGTTTCGAATAAAGAAACATTAATCGTTTATATGTGA
- Protein Sequence
- MSEISMKRSRKSKLEPRKYVDIDDENTTDLQAMPSTSKSKKHENNVPQPQTSHPNEDFEALIDSQKAENQSAPKFSVTVAIEECDDSDSELMIIEPENNTIEILSDSDDDYSISKNSHTNDSNDKVLDELVVTRDQILKATTKIIQQSTNPADKMLGIEVRNCMGQFEVKQIDYHRDKLNKVFVQWQAWQKVITQVKHRSSPLLYKCYICELSWWYLHDFQEHLKCHKDYNLDLEEYTIYEANVIAYLNVEDIVDVKHFYTEGDCPKCGNEFAIHKSINRSKNYLYSCKIKKCYKLFSTCFALRSHEYMYHTISEITGVPFEVGRQNKHCEVCGFVFHSQESYQSHMNLMHSVRSDVVVPVKYSKCAQCKSEYGWHHVCQKLSTKVQCKMCYRSFAKMQVYRAHMNKGGKYQCKLCVCKLQRQCMETEHLLLKHSDNFVIVKKCGTCADFNVFRTDIAAYKHIAEHYNIAEYDQNYSKYCRNILIPKSCLTTKLKPKQSVVIEEKPKETIQVEIKKEVLETIEIHANAVTIDNQINNEEIDNQAQINNEQSDNQLPISYEESDNQAAINNEEFDNQIQVKEEIDIVDNFDAEVLKQAYSKKLEEDAETHSRIFGVKIEAADIEVKQETEEEYEDDIIKLDYSFLANMQQSMDSATEVYIEGVSEMQETDDNMQETDDNMQETDDNMQETDDNMQETDDNMQEIDDESEDSSTKARCRKHRPPKIYRCSRCGFDATHKEYRLHIKNHCEERLYERDYYPCTKCSVHYDTFEKYIDHFVVHNLSPMSCPECYKPYANYEALQAHLASHIRMTFITVPLIRPTKESGMYYYRCKLCEKIVDKENFLVHWELHLAFLESNEREEDEDDEKLGPVDDDMLQQLLERLQSPEPLFKLRRGCPICRRHFDRKMDYKRHLVEHLLNHAYTQRPVYAGLKCQICSLCFQKAEQYKKHMRDHGSLKDYRCEICDKSFSDSSNYTKHKKLHNANAFTCDICKKRFQIKISLEKHMALHVNQKPIECPSCDKVFQLMSLYKKHSRTYHEKERLKFACTVCKKRFVSLKEKWDHLWQVHKERKYKADCPKCDKTYRRFRDLKNHMKDAHRVHIHYLGQRTKPDLKDIKKKIASVKLPQKVSNKETLIVYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -