Lqua022712.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754902.1:6577132-6589972[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.085 13.8 0.4 1 23 240 263 240 263 0.96 2 11 0.00096 0.064 14.2 0.9 2 23 271 292 270 292 0.96 3 11 0.02 1.3 10.1 1.2 1 23 296 318 296 318 0.97 4 11 0.045 3 9.0 6.8 1 23 323 346 323 346 0.96 5 11 0.0015 0.1 13.6 0.1 3 23 353 374 353 374 0.98 6 11 2.9 1.9e+02 3.3 0.0 1 19 381 399 381 401 0.90 7 11 0.0013 0.089 13.8 0.4 2 23 409 431 408 431 0.94 8 11 4e-05 0.0027 18.6 4.8 1 23 437 460 437 460 0.98 9 11 0.00022 0.015 16.3 0.1 2 23 474 495 473 495 0.96 10 11 1.5e-05 0.001 19.9 4.7 1 23 501 523 501 523 0.99 11 11 3.2e-05 0.0021 18.9 0.1 1 21 529 549 529 550 0.94
Sequence Information
- Coding Sequence
- ATGTccacaatattaattaaagatAGTGAATCAATAGATTTACTAGCTTGTAGGACATGTTTAGCGACGGAAAGGAAACTGTACAGTATACACGAGCACAATTTGTTAGAATCTTATAAGAATCTTATTGGAAATCAACCTTCTCCGTGTGACCGTCTACCTCAACATGTGTGTATATACTGTGCGCAACTTCTGCTCAAATTCAACACATTCCGAAGAAACTGCCTACTAACACAGGAGCGTCTAGAAGATGCTAAATATATACATACAACATTAGCAACTAAATACCATCCATCATTAAGTAAATCAACAActaaaataattgatataaCTCAAAATGAATTCCTTGAACTAAAACCTGACTATAATTATGAACAAAATGTTAACTGCGAAGAAAGCGAGGATTCAAATATATACACAGATATTATTAAAGAAGAAATTCCTTTCCCTGATAACATAAAAACAcctaaaaaatttcaaattaaagactataaaacgaaaaaaaaatcgaaatctAAAAAAGAACACTCAAAATCATCTCAAAATATCTCTATAACCAACTCAAAAGTGAAGAAAAAGGGTAAATATTTTGAGACAGATGACAACATGCGTGATTTTgagaatgattataatgttgAGGTGATCATTTTGAGTCCAGATCAACAGATGAAGGACGTTTTGAGTCGAAAATTGAGTAGCAACTATCTGCAGTGTCCTTACAAATGTGAGCTCTGTTTCAAAGGTGTTATGGATGAAGATAGCTTGAACAAACATATGCTTTATCAGCATGACCCGAGCCGAGGGTCCATTGTCTGCCAGTACTGCAGCTTCCGTTACAAAGATAAGAGGGGTCTGAACCAGCACTTGAAGGGCCATAGACTTAAGTTCGCCTGTAAGCAGTGTCCCTACGTGTCTAGAACTAGTTTCAACGCTAAAGAACATTTCAAGATGCACACGGGACACACGCACAAGTGCACACACTGCGGCAAGTCGTATGAGAAACTGTCCAGCCACCTCACCCATCTAAGGATCCAGCATCCATCGGACTTTATCTGGTGCGACATTTGCGGGGAGGCGTTCATTGGACAGTTTGGGCTCAACGCACACAAGAAACGCGCGCACAGACATCTAAGTCTTTCATTCTCGTGCGTCTCTTGTGGGGGGAGTTTTGTCTCTGAGACCGCTCTGGGTCTCCACTCCTCGTATGAGAACTGTTCTCCTGTGAAGTGCGTCCACTGCGGAGTATCCTTCGAGCAGGAGATGGAGTTGAGGGAGCACTTGCTAGAGAAGCACAGAGTATGTAAAGTGTATGAGTGTGAAAAgTGTCACAAGACTTTCACCCGGCAGTCCCTGCGCTCGGCCCACTACCGCCGTTCACACGTGGATgcgacagacaaacagaaactCCTCAGACCCTGGGTCTGTGAGGTCTGCGGGAAGACGCTCCCGAACAAGAGCGTGCTGCTGTACCATCAGAGGAACCACACGGGGGAGAGACCCTACCAGTGCTCCCACTGCAGCAAGAGGTTCACCATGAGGAAACTCCTGCAGTCTCACCTCCGCGTGCACTCCAGTGACCGTCCCTACAAGTGCCCACAGTGCCCTAAAGCGTTCAAAGGACTGTCAGCCCTAAGGGCCCACGAAAATAGGGCGAGGTTGGGGGTTGAACACCTGAGGCCAGTGAAGGCAGCCTCGATACCGATACAGCCTACGGCGCCTCGGAATCCTCACCGGTTCTGGAGGGACGAGGGCGGAGGACAAACACGAGGGGCCAAGAAGGCACCCTCTGGCAAAGGTGCCTCCACAGCCTCCGCTCCAGCCGGGCCTTCCGGAGCAGCACCAATCGCCGATCAGTCCTTTTCTtctttctga
- Protein Sequence
- MSTILIKDSESIDLLACRTCLATERKLYSIHEHNLLESYKNLIGNQPSPCDRLPQHVCIYCAQLLLKFNTFRRNCLLTQERLEDAKYIHTTLATKYHPSLSKSTTKIIDITQNEFLELKPDYNYEQNVNCEESEDSNIYTDIIKEEIPFPDNIKTPKKFQIKDYKTKKKSKSKKEHSKSSQNISITNSKVKKKGKYFETDDNMRDFENDYNVEVIILSPDQQMKDVLSRKLSSNYLQCPYKCELCFKGVMDEDSLNKHMLYQHDPSRGSIVCQYCSFRYKDKRGLNQHLKGHRLKFACKQCPYVSRTSFNAKEHFKMHTGHTHKCTHCGKSYEKLSSHLTHLRIQHPSDFIWCDICGEAFIGQFGLNAHKKRAHRHLSLSFSCVSCGGSFVSETALGLHSSYENCSPVKCVHCGVSFEQEMELREHLLEKHRVCKVYECEKCHKTFTRQSLRSAHYRRSHVDATDKQKLLRPWVCEVCGKTLPNKSVLLYHQRNHTGERPYQCSHCSKRFTMRKLLQSHLRVHSSDRPYKCPQCPKAFKGLSALRAHENRARLGVEHLRPVKAASIPIQPTAPRNPHRFWRDEGGGQTRGAKKAPSGKGASTASAPAGPSGAAPIADQSFSSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00638067;
- 90% Identity
- -
- 80% Identity
- -