Lqua014427.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- Zfy1
- Assembly
- GCA_963576445.1
- Location
- OY754890.1:552750-557490[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.98 66 4.8 2.0 3 23 226 246 224 246 0.94 2 15 1.2 83 4.4 0.0 6 23 258 276 258 276 0.95 3 15 0.028 1.9 9.6 0.3 2 23 287 309 286 309 0.95 4 15 1.5 1e+02 4.1 4.0 1 23 470 492 470 492 0.95 5 15 0.00023 0.016 16.2 2.0 2 23 499 521 498 521 0.92 6 15 4e-06 0.00027 21.7 1.3 1 23 527 549 527 549 0.98 7 15 4.3e-07 2.9e-05 24.8 2.3 1 23 555 577 555 577 0.98 8 15 0.00035 0.024 15.6 1.1 1 23 583 605 583 605 0.98 9 15 0.00029 0.02 15.8 2.0 1 19 611 629 611 631 0.95 10 15 0.35 23 6.2 0.8 3 23 668 687 668 687 0.98 11 15 3e-07 2e-05 25.3 0.4 1 23 693 716 693 716 0.98 12 15 0.00013 0.0089 16.9 2.2 1 23 722 744 722 744 0.98 13 15 1e-05 0.00067 20.5 0.1 1 23 750 772 750 772 0.98 14 15 0.00021 0.014 16.3 0.0 2 23 778 799 777 799 0.95 15 15 0.0069 0.46 11.5 1.2 6 23 809 826 808 827 0.96
Sequence Information
- Coding Sequence
- ATGCAGGGTACAGCGCCAAGCAATCTTGAGAATGTGCAGGATTTCTCAAATGTATGTCGGATATGCGCTACCATCACACAACTCGTGGTTCCTATATTTGCTGGCGAGGGGCTGGAACATCAACTGGCAGACAAAATACACAAACATCTGCCTGTAAAGGTGGCGGAAACTGACCAGTTACCGCTAGTGGTGTGCTACCAATGCGTCAGTACACTAATGGCGTGGCATGAGCTGGTAGAGTGCAGTGTGCAAGCTGACCGGGCACTCAAAGCTAAGATTGGTATGACTACCAGGGCTGAAGATGTTAAAAGGGAGTCACACTCAACGTCAGTGCCGGCATCCGCCATGAAGACTGAAGAGGATTCACAAAGCAAGTTGTTTCACATCATGGTGAGAAACGTTCTGATTGGTTACCATCATTTAAAAGTTGAAGAAAATTCGGATATGGAATTTGTTTGCCAGAAGTGTATTGAGAAACCTGCATTGGCTACAGTGGAGAGTTTGGCAGACCATTTGAAGTATGATCACAGTTCCGATAGTGTGGACGAGGCAGCTGTAGAAATATTCATCAAAAACTATGTCACATTTGAAGAGACTTTAGTTGTTGAAGATTCTGATAGAAGTGACCTAGAAGAGAGTGCAGAGAAACTAGAAATATCATTACCAAATTTGTTTTGCCCGTTTTGCACGAATGTGTTTTCGTCACCAACAAGATTAGTTTGTCACCTAAACAAGCATTTCGAAGTGTCGATCGAAAGCGGCATTATCTGCTGCGATATTCTGTTTGACGACAAGAAAAACTTCGTGGAGCATCTGCAAGTAGCCCATGTTGATAGAAAGATAGGCAATCCAGAGAAAATGTGTAAAACTTGTGGGCTGACTGCAGTGGATACGAAGGAATTACAAGAGCATATTAATAATTCGCATCAAAAGAAGGAAGCTAGCAAAGGAAAGACGCTACAGAGTCCAAGAAACCAGAAATATATACCGGCGATTCAGAAAGAAAACGCATCTCAACTACCATATCACGACGCACAGCAAGTAGACGAGAGAGTAAACAACGTTGTTTGTTGCAGGGACGACTCTTACATACTGGATGTCGCAGACGAGCCTTCAGACCAGTCCGACGATAGGCCACTTTCGACATTAACCACCAAAAAGTCACAAAATCTATACTCAAACTTCTACAGAGCCTTAGTCGAATTTAGAAATCATTTCGTCGATGAACACAAAACTGGTGAATGTTATCCTGATTTTACGGACTCGTCCAGTGCGTCAGAAGTTGAGGAAAGTAATCTAGATAGTTACGATGACTTAACGCAGTGTAACATGAGGAAAGACATTATGGATAAGGAGACGAGACTGGAACTTAGCCAGGTGCAAACTAAAATCAATGGCAAAGTGTTTTATACGTGTAGGATTTGCAGCAAGAATCTCAGTTCGTCACATACGTATGTGTTCCATAAAAGGATACATACCGGTGAGAGGCCTTGCGTGTGTCACATATGCGGGAAGCAATTCAGAGCGCCGAACGGACTGCAACGACATTTGACGGAGACGCACGAGCGCTTACGAAGATACACGTGCAGTTTATGTCCCAAAAACTTTGCTAACTCACAGAATTTGAAACAGCACTTTAGAATACATACCGGCGAGAGACCGTTCGTATGCACGCAATGTGGGAAAACATTCACTCAGAGCGGTTCCTTGCACGTCCATTTGAAAACGCACACCGAGCAGTTTCCGTATCATTGTGCTGAATGCGGAGCGAAATTCCGCTTACGATCCGGTTTAGCGAGACATAGGCTGAAACATACGGGGGAGCGACCTCACGTGTGCGCCCACTGCGGGAAAGGTTTCCGACAGAGACACGAACTGAACTCCCACAGCCTGGCGTTTGGGGCGGTTAAAACCGAAAGAAACGACGCCGATGCCAAAACGGCGAATAGCGTCGGGCCGACGATATCGATCGTGACTCCCGACGGACGGAAGGCCACGTGGTGCGAGCGATGCAATAAAAGCGTATCGCTGGTTTCCTGGCGACGGCACCTCCGCCTGCACGACGGCGAAAAGAGATACAGCTGCCACACCTGCGGACGCGCCTTCGCCGACAGCGGGAACCTGGCCCGACACGCGAGGACGCTGCACGCGCAGCAGCGACCGTTCTCCTGCTCCGTCTGCTTGAAAACGTTTTCTAGAAGGGCGCACCTGGACGATCACGTGAAGTCGCACTCGGAGCGGAGGGAATTCGTATGTGACGTGTGTGGGAAGGCGTCCAAGTCGAGTGCGGCCTTGCGTATGCACGTCCGGACGCATGGAGCTCGTTCACTGTACTGTGTTCAGTGCGGCGCGGCCTTCCGTCGAGCCGCGGAGCTGCGCGCGCACCGCTCGGTGCACACGGGCGAGCGCGCGCACGTGTGTGCGTGCGGGCGCGCGTTCCGCCTGCGCACGCAGCTCAACTCGCACGCGCGGACTCACCACGGAACTGCCGCGCACAGCTAA
- Protein Sequence
- MQGTAPSNLENVQDFSNVCRICATITQLVVPIFAGEGLEHQLADKIHKHLPVKVAETDQLPLVVCYQCVSTLMAWHELVECSVQADRALKAKIGMTTRAEDVKRESHSTSVPASAMKTEEDSQSKLFHIMVRNVLIGYHHLKVEENSDMEFVCQKCIEKPALATVESLADHLKYDHSSDSVDEAAVEIFIKNYVTFEETLVVEDSDRSDLEESAEKLEISLPNLFCPFCTNVFSSPTRLVCHLNKHFEVSIESGIICCDILFDDKKNFVEHLQVAHVDRKIGNPEKMCKTCGLTAVDTKELQEHINNSHQKKEASKGKTLQSPRNQKYIPAIQKENASQLPYHDAQQVDERVNNVVCCRDDSYILDVADEPSDQSDDRPLSTLTTKKSQNLYSNFYRALVEFRNHFVDEHKTGECYPDFTDSSSASEVEESNLDSYDDLTQCNMRKDIMDKETRLELSQVQTKINGKVFYTCRICSKNLSSSHTYVFHKRIHTGERPCVCHICGKQFRAPNGLQRHLTETHERLRRYTCSLCPKNFANSQNLKQHFRIHTGERPFVCTQCGKTFTQSGSLHVHLKTHTEQFPYHCAECGAKFRLRSGLARHRLKHTGERPHVCAHCGKGFRQRHELNSHSLAFGAVKTERNDADAKTANSVGPTISIVTPDGRKATWCERCNKSVSLVSWRRHLRLHDGEKRYSCHTCGRAFADSGNLARHARTLHAQQRPFSCSVCLKTFSRRAHLDDHVKSHSERREFVCDVCGKASKSSAALRMHVRTHGARSLYCVQCGAAFRRAAELRAHRSVHTGERAHVCACGRAFRLRTQLNSHARTHHGTAAHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637967;
- 90% Identity
- -
- 80% Identity
- -