Basic Information

Insect: Lithosia quadra
Gene Symbol: -
Assembly: GCA_963576445.1
Location: OY754886.1:3875153-3878707[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.5e-05 0.001 19.9 2.2 2 23 162 183 161 183 0.91

2 12 4.5e-05 0.003 18.4 2.2 1 23 187 209 187 209 0.98

3 12 0.00043 0.029 15.3 0.1 2 23 231 252 230 252 0.97

4 12 1.5e-05 0.001 19.9 2.6 2 23 260 281 259 281 0.97

5 12 5.1e-06 0.00034 21.4 1.5 1 23 287 309 287 309 0.99

6 12 0.0022 0.15 13.1 4.8 1 23 315 337 315 337 0.97

7 12 1.7e-06 0.00011 22.9 1.0 1 23 343 365 343 365 0.96

8 12 6.3e-06 0.00043 21.1 0.6 1 23 371 393 371 393 0.98

9 12 0.00065 0.044 14.7 1.5 1 23 399 421 399 421 0.97

10 12 1.2e-05 0.00082 20.2 2.6 1 23 427 449 427 449 0.99

11 12 2e-07 1.4e-05 25.8 1.0 1 23 455 477 455 477 0.99

12 12 2.7e-05 0.0018 19.1 2.3 1 23 483 505 483 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.5e-05	0.001	19.9	2.2	2	23	162	183	161	183	0.91
2	12	4.5e-05	0.003	18.4	2.2	1	23	187	209	187	209	0.98
3	12	0.00043	0.029	15.3	0.1	2	23	231	252	230	252	0.97
4	12	1.5e-05	0.001	19.9	2.6	2	23	260	281	259	281	0.97
5	12	5.1e-06	0.00034	21.4	1.5	1	23	287	309	287	309	0.99
6	12	0.0022	0.15	13.1	4.8	1	23	315	337	315	337	0.97
7	12	1.7e-06	0.00011	22.9	1.0	1	23	343	365	343	365	0.96
8	12	6.3e-06	0.00043	21.1	0.6	1	23	371	393	371	393	0.98
9	12	0.00065	0.044	14.7	1.5	1	23	399	421	399	421	0.97
10	12	1.2e-05	0.00082	20.2	2.6	1	23	427	449	427	449	0.99
11	12	2e-07	1.4e-05	25.8	1.0	1	23	455	477	455	477	0.99
12	12	2.7e-05	0.0018	19.1	2.3	1	23	483	505	483	505	0.97

Sequence Information

Coding Sequence: ATGGATACCACTTCTGCTGAAAACTATAACAGTAGTTGTCGCACATGTTTAAACAATGGTGCTGGCCAGATGTACGATATTTTTGAACAAAGTAAAGAGTCCATGAATATTGCTGAAATGCTTTCTGCTTACACTTCTTTGACggtgaCTATGGATGATAAATTACCAAAGAGACTATGCAGCAGCTGTTACTATTGTTTGTTAAGTTTTCACAAATTTACTGTTGTTGCTTTGAGAGCTGATACGAAGTTAAACGAGTATTTCAGCAAATTCAAAGCAATTCAAGAAAATGAAGATCTGACAGATTGGGACGATGCTCATGATAATGATTTAACACAATCAGAATCAATAAAAACAGAATGTAATTTAGATGAAAGTACAGACAATGGTTACTTAGATgttgataaaattgaaaatattaattctaataatatattaacaaaTTGCATTGAAGCACCTGCTATACAGCAAAGCTTAGAACTAAGGTGCGATATTTGTAATAAGAGGTTTAATACGCTAGAAAATCTTAAACATCATATGTGGACACACACTAAAAAGTATGCATGTAGTTTATGTAACGAGACTTTCAGAGACAATCACAGTTATACCCAGCATCTTATAACACATCAAGAAGACCAAGAACAAAAATTGGTAACGCCTGCCACAAATCCAAATGACAATCAAAGTTTAGTATGCGAGATATGCTCATTCTCTTTTAAATCAATACCTTCGCTATCAGCGCATCAAAAGGTACACATCCCCAAAAATAGAATACTGCAATGTggaatttgtaataaaatctttaaaaaaatgagccaTTTAAAACGTCACGAACTCACACATACAGATAACCATAAATACAAATGCACGTTATGCACTAAATCATTTGCAACGGAAGACAATTTCAAAGGTCATATAAACAAGCATAAAGGAATCAAGAATCATCACTGTCCATTATGTATGAAGAGGTTCACACATTTGGAGGCTTTGACAAATCATATAAAAATTCATACACGAGAGAAACCGTTTTTGTGCCCAACGTGTGGAAAGATGTTTGATTCTAGTACAAATTGGACCCAACATATGAAAAGGCATACTGGTGTAAGATTATTTCAGTGTAATTTATGTCCACGGAAGTTTGTTAGTAAAGGTGAGTTGAAAAGCCACGGTATGACCCACACTGGTGAACGTCCATTTGCTTGCGACTTATGTACTGGGAGTTTTACAAAGCGTAGCTATTTAGAGAAACACAAGCTCAGGCATTTGGGAGTTAAGAATTATAAATGTGATGTATGTGCTATGAAATTTGCTGACAAAAATCACTTGAAACGTCACTACAGAATACATACGGGTGAAAAACCTTACCGTTGTGACATCTGTGACCGAGCGTTTACTCAAAGCAATGATTTGGTCAAGCACAAAAGAACACACTTAGGAAACAATTTATACAAGTGCGACGAATGCAGTAAAAGTTTCAGATTGAAGATAGAACTACGTCACCACATATCCGAACACTTCATATCTGCTCAATTACAGTCAAAGGCTGGTCAAAATTCTGAACACTTCATATCCACTCAACTGCGGTCAAAAGTTGATCAAAATACGGAACACTTTATATCTGCTCAACTACAATCAAAAGCTAATCAAAATTCTGAACACTTCATATCCGCTCAACTGCAGTCAAAAGTTGATCAAAATTCTGAACACTTCATATCCGCTCAACTGCAGTCAAAAGTTGATCAAAATTCTGAACAGGGTCGTAATATAGAGGGTAGTTGTAATTTAGATGGTCAACCACGTATTTGTGAATTATGA
Protein Sequence: MDTTSAENYNSSCRTCLNNGAGQMYDIFEQSKESMNIAEMLSAYTSLTVTMDDKLPKRLCSSCYYCLLSFHKFTVVALRADTKLNEYFSKFKAIQENEDLTDWDDAHDNDLTQSESIKTECNLDESTDNGYLDVDKIENINSNNILTNCIEAPAIQQSLELRCDICNKRFNTLENLKHHMWTHTKKYACSLCNETFRDNHSYTQHLITHQEDQEQKLVTPATNPNDNQSLVCEICSFSFKSIPSLSAHQKVHIPKNRILQCGICNKIFKKMSHLKRHELTHTDNHKYKCTLCTKSFATEDNFKGHINKHKGIKNHHCPLCMKRFTHLEALTNHIKIHTREKPFLCPTCGKMFDSSTNWTQHMKRHTGVRLFQCNLCPRKFVSKGELKSHGMTHTGERPFACDLCTGSFTKRSYLEKHKLRHLGVKNYKCDVCAMKFADKNHLKRHYRIHTGEKPYRCDICDRAFTQSNDLVKHKRTHLGNNLYKCDECSKSFRLKIELRHHISEHFISAQLQSKAGQNSEHFISTQLRSKVDQNTEHFISAQLQSKANQNSEHFISAQLQSKVDQNSEHFISAQLQSKVDQNSEQGRNIEGSCNLDGQPRICEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00405250;
90% Identity: -
80% Identity: -