Lqua004665.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754877.1:13427577-13435988[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.005 0.33 12.0 1.1 3 23 208 229 207 229 0.96 2 23 0.19 12 7.0 0.3 1 22 611 632 611 632 0.95 3 23 5.9 3.9e+02 2.3 0.2 1 22 674 695 674 697 0.82 4 23 0.0019 0.13 13.3 2.1 3 22 708 727 708 727 0.96 5 23 0.18 12 7.0 0.0 3 23 736 757 734 757 0.90 6 23 0.0053 0.36 11.9 0.1 3 23 777 798 775 798 0.96 7 23 0.0068 0.46 11.5 2.4 1 23 804 827 804 827 0.95 8 23 0.11 7.5 7.7 0.0 1 23 854 877 854 877 0.90 9 23 0.0049 0.33 12.0 3.5 1 23 882 904 882 904 0.97 10 23 0.073 4.9 8.3 0.2 1 23 910 933 910 933 0.95 11 23 0.0021 0.14 13.2 1.3 1 23 946 968 946 968 0.97 12 23 0.00016 0.011 16.7 1.8 1 23 1024 1047 1024 1047 0.97 13 23 0.0075 0.5 11.4 1.1 1 23 1108 1131 1108 1131 0.96 14 23 0.0021 0.14 13.1 2.1 2 23 1158 1180 1157 1180 0.95 15 23 0.078 5.2 8.2 0.1 2 23 1186 1208 1185 1208 0.93 16 23 0.0088 0.59 11.2 0.2 1 21 1252 1272 1252 1273 0.95 17 23 0.00037 0.025 15.5 1.0 1 23 1283 1305 1283 1305 0.93 18 23 0.0001 0.0067 17.3 0.3 2 23 1395 1417 1395 1417 0.93 19 23 3.5e-07 2.4e-05 25.0 1.4 3 23 1424 1444 1423 1444 0.98 20 23 0.0058 0.39 11.7 1.6 1 23 1463 1485 1463 1486 0.95 21 23 0.11 7.2 7.8 0.0 1 23 1512 1534 1512 1534 0.97 22 23 0.025 1.6 9.8 0.6 1 23 1540 1563 1540 1563 0.95 23 23 0.00023 0.015 16.2 0.4 1 23 1571 1594 1571 1594 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAACTATGATCGTGTTTGTAGACTGTGTTTGTCATCTAGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTCAAAAATCAAGGATTGCGTCTCTGTAGAGataAGTGAAAATGATGAGCTGCCCACGAATGTCTGCAGGAAATGTATGGACAATGTCAATAACTGgcatgtatttaaaaatgtttgtgaAAGGACTCAAAACAAACTACAGTCTCTGATTAGTAAAGATGGCAGCCAACTAGAAGAGGTGCAAATAAAGAGTGAACCATTGTCTGATGAAGCTTATGATGATGGAGTTGTTATTGAAGGCTCATATCCTGATAGTGAGaATGCCACTCTGGCAAATAAAGTTCAACCTGAAGGTCCCCCAATCTTGGCTTCATTGGGGCTCACACCAAGGAGTGATAAGGGAGTGGAGAGTGAGAAAGATGAAGAGGAGGAAGAAGATGAAGAAGTGAACGAAACCGCTCAATCATTCCCCAAAATGCCCAATATGCCGGAAGTGTCTATAACAGTAATGCGTCCAACGGGCGAGACGCTGCACGCTCGACAAGGTATTCACCAACTCGCTTCTAAAGACTGTCTCGTTTGCGGTCGCACCTACAGGTACTCCCATAATGCGCGTCGACATGAACTGACAGCACACAGTTTTGACAGGTACACAAACAAAATAACTCCCAAGAAAACACTCAGTCATCATCTCCAACCCAAACTGAGACCAAATCCTTTCAACCCTAAAGCACGGTTGATGCCCAATCCTATTAGTCATAAAATGCAATTTATGTCGAAAAACATCCCATCAAAAgtagtacctattaataaagTTATCACGCCACAGAAGCCCATACCGATAAAATCGGCAAAACCGCCACAAAATAATCTGCCTTATCCTCTTCGTATTAAAGCCCTTAAAGATTTACAAATTAAGAAAAAGGAGCCTCAAATTCTAAAAACATTATTGACCTCTAAACCTGAGGTTCTAGTGTCGgaacctgaaataataaattctggACCTGAGAGTCCCGAGACACTCATATCCGAACCTGAAATTGCTTCTTTCCAAGTGGAAGCGATACTTTCTGAGCCTGACGCCGACGTCTATGATCAACAACAAGGCGACGAGGAAGTTGACGGAGATATGCATAATAACCAAGGTCAAAATTATGATACGGTTGATATGAATTCGGAAAATGAAATTGAGATAGCTCGGCAACAGGGAGATGAGGTTGATGGCGAAGAACAGGTCGACGGTGATGAAAATATGGATCAAGACGATAATAATATGGATGGCGGTCAGAGTGACAACGATCAAGATGGCGTTGATGATACGGTAGACAGTCAAGAGAACATGGAAATGGGAGATGGTTTCGAAATTAAAGCAGAACAAGAGATGAAGGAAGGTGAGGATGGTTCTGAGGGAAGAGACCAGGAGGAGATTGAAATGAATCACGCCATGAATgacgatgatgacgatgatCTACCAATGTCAATACAACCAGTTGTTGAAATTAATGAAGACTTGCAAGGTAACTCGTTTAATACTGAGATGGGCGAGGATGATGAACAAGACGAGACTGTTGACCCTAACGAGGCTGTTGACGAAGAGGAGATCAAGGAACTTGATCCTGACAAAACTTACGTCACCAAGACACAAAGAGATTTCATTTTGAAGTATCGCGATGTTATTCAACAAATCAATACAAAACGTTGTTTGTGCTGCGACAGAGAACATCCACGCAGAAAAGCAGTTATTCAGCACTTGCAGAAAAATGGTCAAAAGGTACCTAAACATACCTGTTATAATTGCGTAATTACGTTTGGGCATATAGGTGCTCTACTCAGCCATATGAGGTCAAATTCTTGCACTGACTTATGGAAGATTATATATAACGAAAATGGAATTACTGATGACTTGGTTCTAGAGGATGAGCCTAAGGAGGTCAAAGTTCAGTATAAAGATATATTTAATGCTAGATCTTATGCTTGCAAGCTCTGTCCAGCAAAATTCCAATTGAAGCAGTTCATAATGAAACATGTTTTAGACGCTCATGAAGATGGGCAGTCTAGGGTGCCTCTTGGCTGTGTTCATTGCCGAGCAAGGTTTAAAGACAAAAGTTTGCTTAAGAAGCATATTCGTAAAGGTGACTGTACAGTTTATGTAGCGTGTGATTTATGTCCAGAAACGTTTGGGAATATGCAGAATTTCAACGACCACGCATTAGCTGTTCATGCTGGTAGTTTCGAATCAGATAGTCAGAGCAAATGTGTCGACGGTCGCCCTACTGACTGTCCAATATGCGGAAAGAAAAATAGCAGCTATCCAAATTTAGTAAAGCATTTGAAAATTATACACAATGAAGAAAAGCCTCACTACTGCCAACATTGTGATTCTAAATACGAACAAGCTGCTGATCTcaacaaacatatttatatgGAGCATTCAGACAGGACTTTGGGTATGAATCTAAACAATGAGCCGGATATGTCCATCGTGAAGGAAGAGGCGGAAGAGTACCATTATTCTTGTACCGAATGCAACGCCATATTTGAGACAGTTGACGCGTGGACAGACCACCAGGTGGCCGAACACAATCAAGTGGCGCATCACTGCGACCAATGCGACAAGAAATTCTTACGTCCTTCTGAACTTGCGGAGCACAAGAACACTCATTTGAGGGTTAAGTTCTATCCGTGCAGCGTGTGCGCCAACTCCTACAGTACTCCACAAAAACTGTCTGAACATGTACAACAATCCCACCCGGGCATCGGCGCAATCGCTGCAGCAGATACAGAATTCTTTTGCGACATCTGTATCAGATCGTTCAAAAGCCGTCAAGCATATTCAAACCATATGCGCATTCACGCCAAAGTACCTACTACCAATAGAAAACCGGGAGATGTCCCTCCTACTTCTTCGAACAAAGGGTTTTCACCCTCAATTATAGGCAAACCAATTAAACAAGTATACCCAATGGTTCAACCCGGTTTTGTATCATTCAAACCTCATTACAATATTCCGAATGCACCCTATTCGTGTGATATTTGTGGAAAAGGATTCATGCATAAAAAGAATATATGGAAACACAAAAAAGTTTTGCATGCTGATATACTAAATGAAAGAAACGACAGTGAGGAGAATACTATGCAAGCTTCCACCGAAGAAGATGAATTTAACCCAGATGAAAATGGTACTATTCTCTCCACACCACAATTCAATAGTTTCAACTTTGGTAACTTTGCCAACAATGTCCAACAAACACAACAACAAGACCCTATGCCGTATTCATGTGAACTGTGTCTCAAACGGTTCCCACTTAGAACTAGTCTCTGGAAACATAAACGCGCTAAACATGGCATAGTTAATCCTAGTTCTAGTGGCGGCAATGATACGCAAACTCCATCGGCAAGTGGCGAAGGAAGCAGTAGATCTAGTTGCACAATATGTAGAATTACATTTTCAGATAAGAAATCTTATTATCGTCATCGGAAAAATGTACACAAGTCCACTGTACAAATGTGCAAAATTTGTGGAAAACCCCTTAACTCAACTTTGGAATTATATGAGCATTTGAAAGCTGCCCACGCCAGAGAACTATTAGGTTACAATGCTAATCAAGGTTCCAGTAAATCGCATGAAGCATCACAAGAGATAGAACCAGATTATGATAATGACCAGGAATCAGTGGATCCCAGCGTTGATTATCAAGCTCGCTACCCTTGCGACACTTGTGGCAAACAATTTGTTGGTTTGTTAGCATTACAAAACCACCAGTGCATAAATCAGGGCCCGTCACaaccacaaacatttgactgtgAAATCTGCCACAAGAGTTATACCTCAATATCGGCACTAAAGAGCCACCGTGGATGGCACTTACGGTCACCGGATGGAAAAGCAGCTGCTAATAACAGCGGGCTTTGGATGCCCCAACACAAAGTCACGAGCAAAATAAGTAAACACGAAGTGATTGATCCAGTGCAACTCGCTAAAGTCACGCACTCGAGTCCTGCCGCCGCAGTAGCGGCCAAGAGAAGACTTCCGCCAGAGGTCGAAGTCACCGTTGTTAATCCAAACAAGAAAATGCGATCTGACGATTCTGTTGAATTAGAACAGCAAAATTCTTGTTCGGCTGAAGACAGGTACTGTACGATTTGTGATAAAGAGTTTACCAAACGGGCAGCTTATCAGCGTCACATGGACGAAGTGCACCAACCGAACTCTGTGTTCTGTCCAGTTTGTGATAAGAGTTTCACTAGGAAGTCGACGCTACTTATCCACATGAAGAAACATTATGAGAGTGGTGAAGGCAGTTCTAGCATGGTTGGTCAAGTTGAAGACGACATGCACACGTGCGACTTATGTGGAGCCCAATACGATGATGAACAATCGCTGACAGCGCACCGAATGAGGCATCACGGGGAGGAGTCGGAAGAAGacgatgatgaagatgatgGAGAAGATGGCAATGTGCCCATTGCGCCTCCAGGTGAGTTCACGTGTGGACAATGTGGTGATGGAGTAGCTACACCTCGGGATTTGATCGCTCACCGCACAATGCACGCTACTCCCACTAAATTCTTCTGTAACATTTGCAAAGTATACTTTGCGAGAGCATTGGACCTGTCGTCCCACACCAGGGCTAGGCACGCAGACaatgaaaaggttttttttccttgcGCAATGTGCGATAGGTTCTATATGAACAAGAAGAGTTTGCAGCGGCACATTGAGATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIKDCVSVEISENDELPTNVCRKCMDNVNNWHVFKNVCERTQNKLQSLISKDGSQLEEVQIKSEPLSDEAYDDGVVIEGSYPDSENATLANKVQPEGPPILASLGLTPRSDKGVESEKDEEEEEDEEVNETAQSFPKMPNMPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRTYRYSHNARRHELTAHSFDRYTNKITPKKTLSHHLQPKLRPNPFNPKARLMPNPISHKMQFMSKNIPSKVVPINKVITPQKPIPIKSAKPPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDADVYDQQQGDEEVDGDMHNNQGQNYDTVDMNSENEIEIARQQGDEVDGEEQVDGDENMDQDDNNMDGGQSDNDQDGVDDTVDSQENMEMGDGFEIKAEQEMKEGEDGSEGRDQEEIEMNHAMNDDDDDDLPMSIQPVVEINEDLQGNSFNTEMGEDDEQDETVDPNEAVDEEEIKELDPDKTYVTKTQRDFILKYRDVIQQINTKRCLCCDREHPRRKAVIQHLQKNGQKVPKHTCYNCVITFGHIGALLSHMRSNSCTDLWKIIYNENGITDDLVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDAHEDGQSRVPLGCVHCRARFKDKSLLKKHIRKGDCTVYVACDLCPETFGNMQNFNDHALAVHAGSFESDSQSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKYEQAADLNKHIYMEHSDRTLGMNLNNEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCANSYSTPQKLSEHVQQSHPGIGAIAAADTEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDVPPTSSNKGFSPSIIGKPIKQVYPMVQPGFVSFKPHYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMQASTEEDEFNPDENGTILSTPQFNSFNFGNFANNVQQTQQQDPMPYSCELCLKRFPLRTSLWKHKRAKHGIVNPSSSGGNDTQTPSASGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKSHEASQEIEPDYDNDQESVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQGPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPVQLAKVTHSSPAAAVAAKRRLPPEVEVTVVNPNKKMRSDDSVELEQQNSCSAEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSMVGQVEDDMHTCDLCGAQYDDEQSLTAHRMRHHGEESEEDDDEDDGEDGNVPIAPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155687;
- 90% Identity
- -
- 80% Identity
- -