Basic Information

Insect: Lithosia quadra
Gene Symbol: -
Assembly: GCA_963576445.1
Location: OY754902.1:4963419-4979203[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00082 0.055 14.4 2.4 3 23 190 210 188 210 0.97

2 13 1.1e-06 7.4e-05 23.5 1.5 1 23 216 238 216 238 0.99

3 13 1e-06 7e-05 23.6 4.1 1 23 244 266 244 266 0.99

4 13 1.9e-07 1.3e-05 25.9 2.8 1 23 272 294 272 294 0.98

5 13 1.6e-07 1.1e-05 26.1 0.9 1 23 300 322 300 322 0.99

6 13 1.5e-06 0.0001 23.0 3.0 1 23 328 350 328 350 0.98

7 13 6.3e-06 0.00042 21.1 4.0 1 23 356 378 356 378 0.97

8 13 5.7e-07 3.8e-05 24.4 1.4 1 23 384 406 384 406 0.98

9 13 0.00012 0.0079 17.1 4.7 1 23 636 658 636 658 0.98

10 13 6.4e-06 0.00043 21.1 3.1 2 23 667 688 666 688 0.96

11 13 2.8e-06 0.00019 22.2 2.9 1 23 694 716 694 716 0.98

12 13 6.3e-06 0.00042 21.1 2.1 1 23 722 744 722 744 0.97

13 13 2.5 1.7e+02 3.5 5.0 1 23 750 767 750 767 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00082	0.055	14.4	2.4	3	23	190	210	188	210	0.97
2	13	1.1e-06	7.4e-05	23.5	1.5	1	23	216	238	216	238	0.99
3	13	1e-06	7e-05	23.6	4.1	1	23	244	266	244	266	0.99
4	13	1.9e-07	1.3e-05	25.9	2.8	1	23	272	294	272	294	0.98
5	13	1.6e-07	1.1e-05	26.1	0.9	1	23	300	322	300	322	0.99
6	13	1.5e-06	0.0001	23.0	3.0	1	23	328	350	328	350	0.98
7	13	6.3e-06	0.00042	21.1	4.0	1	23	356	378	356	378	0.97
8	13	5.7e-07	3.8e-05	24.4	1.4	1	23	384	406	384	406	0.98
9	13	0.00012	0.0079	17.1	4.7	1	23	636	658	636	658	0.98
10	13	6.4e-06	0.00043	21.1	3.1	2	23	667	688	666	688	0.96
11	13	2.8e-06	0.00019	22.2	2.9	1	23	694	716	694	716	0.98
12	13	6.3e-06	0.00042	21.1	2.1	1	23	722	744	722	744	0.97
13	13	2.5	1.7e+02	3.5	5.0	1	23	750	767	750	767	0.86

Sequence Information

Coding Sequence: ATGTTTCAACCGAATGTAAAAAGTGATGCCAAACCGGCAGTTACTGAAATGGTTTATAACGTGAAAATTGAACCGGATTCTGAAGAGGAACCTGCAGAAAATGATACAGACTGTCAAGGTTTAATCTATGATAATCTCGAGATCGTAATGAGGGAACCGGACAACCCACAGACAAGTACAAAAAGCCATAATGCAGAGAATGCTGGAGAGCAGTTCCCTCGACCTTCGGCGGTGTATGTGGAGGAACATGTATCCCTTGAAATCGTGAAGGTTGAAGTGTCTGATGGTAGCAAAAGTGATCctgaagtaaaaaaatgtagctCGCCGATACCGGTTTTGGAGGTGAATGAACCTAAGATTGAGGAAGAAGTTGTTAAAAGACCAAAACGCAATACTAGAAAGATAACTTATACAGAGAAACCGCAGAAAATTATTAGACCACAGAAAAATAGTGAAGCGAAGAACGCAGTGAATAAGACAATACCGGTGCATAACAATGCTGAATTGGAAGCAGTCGAGGGTCAACCAGCTTCTGGTGATGGTAATCCACCATTGAAACGATATGGTTGTGACAGTTGTGAGAAACGTTTCAACACCAGAGCCCGTTTAAAAAAGCATTTCCGAACACACACAGGGGAAAAACCATATGAATGTGCCATATGTAGCAAACGTTTCAGTGTAAAGAGTAATTTAAATTATCATACACGCACACACACCGGGGAAAAACCTTATAAATGTGCAGTATGTAATAAGTGTTTtagtttaaaaagtaatttagaAACTCATACTCGTACTCATACGGGGGAGAAACCGTTTGAATGTTTTGTGTGTAGGAAATCTTATAATCAAAAAGATAATTTGAATAGACATATGCGGACACACACCGGTGAGAAACCTTACCAATGTAACGTATGTGAGAGACGGTTTGCTAATCAAAGCGCTATGAGAAGACATATAAGAACACACACTGGTGAGAAACCACACCAGTGTAGTGTGTGTGATAAAACGTTCACTGCTAAGACTACGTTGAATAATCATATACGGACACACACCGGTGAGAAACCTCACGTGTGTGGTGTATGCAACAAATGTTTCAGTGTGAAGAGTTCTCTAAATAATCATTATCGTGTGCACAGCAGTGAGAAACCGTTCCGTTGTGATGTATGCAGTAAGGACTTTAGTGACAAAAGCACGTTGAAAACTCACCTCCGCGTGCACACAGGTCTGagaccttatgagtgtaatCATGCGACGGAAGACAGCGGACCACTGCAGCTCTGTTACATTTGCTATGCGAGGCTGCAGAACTGTTACCAGCTAAAACGGACCTGTCTGCAAAGCGTGGAGTGGTTCGCACTCCACTGCGGTACGttaccaCCCAAGCCACCACAACCTCAAACTGCCAGTatgaaaagttttaaaatagatCACCTAGTCGTTCACTTGAGTTTGGGAGAGGCACCCCCCCAGAGCACAGACAGTGACGATGATATGAAAGCCACGCTGGAGGAGTGTGGTGCTGAAGTAAAACAAGAAGATTTTGAAGAATTTGAAAGTGAACCTCCAGGAGATTGTACAGAGGACATCTTTACTCCAATAGTTGGTCTACACGTGCCACCCGTGAAAGAAGAGGATGATGGCAACACGACGTTTAAAAGCGAACCTTCCGAAGAGGACAGTGTAGACTCTATAGAACACACGTTTGCGGCAAATCCTTTAGAGTCTTTAGACGCTCCTCTCACGACGGACGACGTATGTGACGTCACCACAGTTATTGGAAGTGCCAATATCAAAAAGAAACCTAAACCACTCGTGGCAAGGGATCTAGAAGATGTGATACCCAGCTATTTTGAAGAAAACGAACAATCATTACTTGTGATCACCGATAAAAACGGGGAAAAACCGCACAAATGTTTGATTTGTAACAAATGCTTCACATTAAAAGCTAATTTAGAAACTCATAACCGTATACACACAGGGGAAAAACCGTTTCAATGTATGtgtaatgtatgtgaaCGAAGTTTTTCAAATCACGGCGCTTTGCGGAGGCATATAAGAATACATACCGGTGAGAAACCacatcagtgtaatgtatgtgatAAAACCTTTTCAGCTAAAACTACGTTGGATAATCATATGCGAACACACACAGGGGAAAAACCTCACGTGTGTAATGTGTGTAAGAAAGGTTTCAGTGTGAAGAGTTCTTTGAATAGCCATTATCGTGTACACAGTAATGAGAAACCATTTCGTTGTGATGAATGTGATCGGTATTATTTACGAAAACATATACGTAGACACAACTCCTAA
Protein Sequence: MFQPNVKSDAKPAVTEMVYNVKIEPDSEEEPAENDTDCQGLIYDNLEIVMREPDNPQTSTKSHNAENAGEQFPRPSAVYVEEHVSLEIVKVEVSDGSKSDPEVKKCSSPIPVLEVNEPKIEEEVVKRPKRNTRKITYTEKPQKIIRPQKNSEAKNAVNKTIPVHNNAELEAVEGQPASGDGNPPLKRYGCDSCEKRFNTRARLKKHFRTHTGEKPYECAICSKRFSVKSNLNYHTRTHTGEKPYKCAVCNKCFSLKSNLETHTRTHTGEKPFECFVCRKSYNQKDNLNRHMRTHTGEKPYQCNVCERRFANQSAMRRHIRTHTGEKPHQCSVCDKTFTAKTTLNNHIRTHTGEKPHVCGVCNKCFSVKSSLNNHYRVHSSEKPFRCDVCSKDFSDKSTLKTHLRVHTGLRPYECNHATEDSGPLQLCYICYARLQNCYQLKRTCLQSVEWFALHCGTLPPKPPQPQTASMKSFKIDHLVVHLSLGEAPPQSTDSDDDMKATLEECGAEVKQEDFEEFESEPPGDCTEDIFTPIVGLHVPPVKEEDDGNTTFKSEPSEEDSVDSIEHTFAANPLESLDAPLTTDDVCDVTTVIGSANIKKKPKPLVARDLEDVIPSYFEENEQSLLVITDKNGEKPHKCLICNKCFTLKANLETHNRIHTGEKPFQCMCNVCERSFSNHGALRRHIRIHTGEKPHQCNVCDKTFSAKTTLDNHMRTHTGEKPHVCNVCKKGFSVKSSLNSHYRVHSNEKPFRCDECDRYYLRKHIRRHNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -