Basic Information

Insect: Lithosia quadra
Gene Symbol: -
Assembly: GCA_963576445.1
Location: OY754903.1:5736508-5741384[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4e-07 2.7e-05 24.9 0.5 1 23 199 221 199 221 0.98

2 14 0.029 2 9.5 3.8 1 23 227 250 227 250 0.94

3 14 9.1e-07 6.1e-05 23.7 0.4 1 23 256 278 256 278 0.98

4 14 2.5e-06 0.00017 22.4 3.1 1 23 283 305 283 305 0.99

5 14 9.2e-06 0.00062 20.6 3.7 1 23 311 333 311 333 0.99

6 14 8.4e-07 5.6e-05 23.8 1.1 1 23 339 362 339 362 0.95

7 14 5.3e-05 0.0035 18.2 2.9 1 23 368 390 368 390 0.97

8 14 1.8e-05 0.0012 19.7 0.8 1 23 396 418 396 418 0.98

9 14 5.1e-05 0.0034 18.2 2.1 1 23 424 446 424 446 0.99

10 14 6.4e-08 4.3e-06 27.4 0.7 1 23 452 474 452 474 0.98

11 14 2.1e-06 0.00014 22.6 3.5 1 23 480 502 480 502 0.98

12 14 0.074 5 8.3 2.9 1 23 508 527 508 527 0.95

13 14 8.2e-07 5.5e-05 23.9 0.7 1 23 533 555 533 555 0.98

14 14 0.0012 0.082 13.9 6.1 1 23 561 583 561 583 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4e-07	2.7e-05	24.9	0.5	1	23	199	221	199	221	0.98
2	14	0.029	2	9.5	3.8	1	23	227	250	227	250	0.94
3	14	9.1e-07	6.1e-05	23.7	0.4	1	23	256	278	256	278	0.98
4	14	2.5e-06	0.00017	22.4	3.1	1	23	283	305	283	305	0.99
5	14	9.2e-06	0.00062	20.6	3.7	1	23	311	333	311	333	0.99
6	14	8.4e-07	5.6e-05	23.8	1.1	1	23	339	362	339	362	0.95
7	14	5.3e-05	0.0035	18.2	2.9	1	23	368	390	368	390	0.97
8	14	1.8e-05	0.0012	19.7	0.8	1	23	396	418	396	418	0.98
9	14	5.1e-05	0.0034	18.2	2.1	1	23	424	446	424	446	0.99
10	14	6.4e-08	4.3e-06	27.4	0.7	1	23	452	474	452	474	0.98
11	14	2.1e-06	0.00014	22.6	3.5	1	23	480	502	480	502	0.98
12	14	0.074	5	8.3	2.9	1	23	508	527	508	527	0.95
13	14	8.2e-07	5.5e-05	23.9	0.7	1	23	533	555	533	555	0.98
14	14	0.0012	0.082	13.9	6.1	1	23	561	583	561	583	0.98

Sequence Information

Coding Sequence: atgtctTTTGGGTGGAATATAAACGATTTATGTCGTTGCTGCCATGCTCAAGGCAGTTTTAAGAGCTCAAATGTGTCTGATAGTATTGAACAAGATTACTATGTGCTGTTAAAagatacttttgatattattGTAACTCCCATCCCGCTAGAAACAAATGTGTCCTACAATATATGCGAGATGTGTGAACCGCGGCTCAGGGATGCTGTCCTGTTCAAGAAGCAGGTGTTATCCTGCGAGGATAGGCTGAAACAATATCTGTATAAGGATTATGAACTCAAAGATGCAGTCCCTTTAGAGAACACCGTTAAACATGAATTAGAACAATATGgtCTAAAAACTGAACTGCCATCTTTTGAAGATAAATTGGAATTGAAATGTAGTGAAGTCAAACTTCAACACTTGGACAAGTTACTGCAGCCAGAAGACGATGACCAGCCGTTGTCGACATTACGAAGGTCTAAGGAGCTCCTGGAGTATACCCAGCAAGCAGAACAGCATCACGACCCTGGTGTAGAAGATGTGGATTGGGGAGCTTCACCAGATTTGAGTGACGATGAAACTCCAAAAGGAAAAGCAACCAAAACAAAGAAATACTCGTGTGAGATTTGTCAAAAGAAATTCTCCTACAACGGATCTTTGGAGGTCCATATGAAGGTTCATAACGGAGAGAAATCTTTCCCCTGCCATCTTTGCAACACATCACATCGCGATAACAAAGAATTAACCAAACACATCACATTAACGCACATTGTCGACAACCAATACCCTTGCAACATTTGCGATAAAGTTTTCGATAAAGCTCGTATGTTgaaaaaacatataaaattacattataatgagAAATTCAAGTGCACAGAATGCCAAAAAGAATTCCAACGAAAGAAAGGTTTAAAGGAACATATGAAAACGCATACTGGTGAGAGGAAATACACTTGCGAAGTGTGCAATAAATCATTCGGACACAATCAGACGTTAAAATCTCATATGTTTACACACACAGGTGAAAGACCTTATGTCTGTGATGTGTGTGGAAGGAGGTTCCCTCAAAGGACGCATCTAAAAAGGCATATATTTATAATCCATGCGGGTATCAAACCGCACAGTTGCAGCGTTTGTAAAAAGCAGTTTTCGAGTAAAAGTTATTTGGCAATTCATGAGAGGCAACATACAGGTGAAAGACCATATTCGTGTGAAGTTTGTAAAAAAGATTTCACTGCTTACACTACTTTGAAAGTACATATGCGTGTACATACAGGTTTTAAACCATATACATGTAGCTTTTGTGACAGACAGTTCGCACAAATGGCTAGTTTTAAGCTCCACCAGCGAACACACACAGGGGAAAGACCTTATTCgtgtaaaatttgtaaaaaaccATTTTCTGATAATGGTTATTTGAAAATCCATATGAGGGTACATTCTGGGGAGAAGCCGTTTTCGTGTGAGATATGTAAGAGATGTTTTAGGGAGACTGGGCAATTGAAAAGACATATGCGAGTTCATACCGGTATTAAACCTTATAcatgtaaaatttgtaataaGCAAATAGGAAATTTGTCTAAGCATATGAGAGTACATTCAGAACAAAGGCCTTATAGCTGCAATGTGTGTAATAAACAGTTTTCTATAAATGGAAATCTGAAGTTACATATGAGGGTACATACAGGGGAGAGACCGTTCAGTTGTGATCTGTGCAGCTGTCAGTTCACGCAGAGCAGCGGGTTAAAGAGACATCGGTGTATACATGTAGGCAAAAGTAATGGTTGA
Protein Sequence: MSFGWNINDLCRCCHAQGSFKSSNVSDSIEQDYYVLLKDTFDIIVTPIPLETNVSYNICEMCEPRLRDAVLFKKQVLSCEDRLKQYLYKDYELKDAVPLENTVKHELEQYGLKTELPSFEDKLELKCSEVKLQHLDKLLQPEDDDQPLSTLRRSKELLEYTQQAEQHHDPGVEDVDWGASPDLSDDETPKGKATKTKKYSCEICQKKFSYNGSLEVHMKVHNGEKSFPCHLCNTSHRDNKELTKHITLTHIVDNQYPCNICDKVFDKARMLKKHIKLHYNEKFKCTECQKEFQRKKGLKEHMKTHTGERKYTCEVCNKSFGHNQTLKSHMFTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHAGIKPHSCSVCKKQFSSKSYLAIHERQHTGERPYSCEVCKKDFTAYTTLKVHMRVHTGFKPYTCSFCDRQFAQMASFKLHQRTHTGERPYSCKICKKPFSDNGYLKIHMRVHSGEKPFSCEICKRCFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSEQRPYSCNVCNKQFSINGNLKLHMRVHTGERPFSCDLCSCQFTQSSGLKRHRCIHVGKSNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707185;
90% Identity: -
80% Identity: -