Lqua019595.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754897.1:1073171-1082592[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.34 23 6.2 2.4 1 23 135 158 135 158 0.94 2 35 0.28 19 6.5 0.5 2 23 186 208 185 209 0.95 3 35 0.072 4.8 8.3 1.4 2 23 231 252 231 252 0.97 4 35 2.6e-05 0.0017 19.2 0.4 1 23 256 279 256 279 0.96 5 35 0.005 0.34 12.0 1.6 1 23 284 307 284 307 0.97 6 35 0.33 22 6.2 0.5 1 23 314 337 314 337 0.82 7 35 0.011 0.76 10.8 1.4 2 23 345 367 345 367 0.96 8 35 4.9e-05 0.0033 18.3 1.4 1 23 373 395 373 395 0.97 9 35 1.8e-06 0.00012 22.8 0.3 1 23 401 423 401 423 0.99 10 35 0.8 54 5.0 3.3 1 13 429 441 429 442 0.92 11 35 0.076 5.1 8.2 0.2 2 23 558 580 557 580 0.96 12 35 0.28 19 6.5 3.0 2 23 603 624 602 624 0.97 13 35 7.5e-06 0.0005 20.8 0.0 1 23 628 650 628 650 0.98 14 35 0.045 3 9.0 5.4 1 23 655 677 655 677 0.98 15 35 0.16 11 7.3 1.2 1 23 684 707 684 707 0.89 16 35 4.8 3.2e+02 2.6 0.1 9 20 745 756 743 758 0.88 17 35 0.015 0.99 10.5 3.8 1 23 779 802 779 802 0.96 18 35 0.016 1.1 10.4 0.8 2 23 829 851 828 851 0.97 19 35 0.096 6.4 7.9 4.3 2 23 874 895 873 895 0.96 20 35 0.045 3 9.0 0.4 1 23 899 921 899 921 0.98 21 35 0.0019 0.13 13.3 2.3 1 23 926 948 926 948 0.98 22 35 0.23 15 6.7 0.2 2 23 956 978 955 978 0.89 23 35 0.00048 0.032 15.2 0.2 3 23 987 1008 986 1008 0.96 24 35 0.0011 0.074 14.0 2.9 2 23 1015 1036 1014 1036 0.97 25 35 1.9e-05 0.0013 19.6 0.3 1 23 1042 1064 1042 1064 0.98 26 35 0.0089 0.59 11.2 1.5 1 23 1144 1167 1144 1167 0.92 27 35 0.33 22 6.2 0.1 2 23 1193 1215 1192 1215 0.94 28 35 0.13 8.4 7.6 0.5 2 23 1238 1259 1237 1259 0.97 29 35 0.32 21 6.3 0.5 1 19 1263 1281 1263 1285 0.90 30 35 0.00028 0.019 15.9 2.3 1 23 1290 1313 1290 1313 0.95 31 35 0.8 54 5.0 1.7 1 23 1320 1343 1320 1343 0.85 32 35 1.8e-05 0.0012 19.6 3.3 1 23 1350 1373 1350 1373 0.98 33 35 9.7e-05 0.0065 17.4 3.7 1 23 1379 1401 1379 1401 0.98 34 35 2.1e-05 0.0014 19.5 1.2 1 23 1407 1429 1407 1429 0.99 35 35 0.0011 0.072 14.1 3.3 1 23 1435 1458 1435 1458 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTTAAACCAGAAGACAGTACTTTACATAATTCAAACACAAAGAAAGCTAGTACAACAACAAGTAATGcgaaaaacaaaaaagttgCTAAAATAGCAAGTAATACGAAAAACAAAACAGTTACAACAACATCAAATCATTCCAAAAACGTGAAAGATTACACTTCAAAATCAAGTGATTCGAGTAATGATAAAGAGACTACAGAATCAAGTGATTCGAATAAGGAGAAAGATACTACAGAATCAAGTGATTTGAATAAGGAGAAAGTCacttcaaaatctaaaaaaatcccTCTAGTATCGACTAGTAGGAAGGAAATACATAAACACCGGACTAATATAGCAGAAGTGTTGCTGTATAGCAACGCCACACCAATTAGGCGCTTCGAAGATATGGGTTATCAGTGCTGTTATTGTAAAGATCAGTACACTCTCCCTGCAGATTTAAAGAAACATACGTTAGAAACACATCGAGATCAAGACGTACGAAAGGCTTGCTTTATGAAGATCGGGATGGAAATGTTAGTCGTAAGGTTAGACACTACAGCTCTACAATGCAGGATCTGCAACCAGAATATCGACACCCTCGAACTACTACTGGAGcatttaaaatctgttcatcATAAAACAATCCACACCGACATCAAGAACCACATGACTGCATTCCAATTTGTTACGGAAATGCCACAATGTAGCATTTGTAAGAGTACTTTTAACAAATTCAAACTTTTACTCGAACATTTAAACTTACATTACCGGAACTATATTTGTGAGCTCTGTGACACAGGTTTCACGACTATCCGTAGTTTGAAGAAGCATATGCGCGAAGTACACAGTACTGGCACGTTTAATTGCGATTACTGTTCACGAGTATTTGAAAACGCTGCTAAGAAGAAAACACATGAAAGAACAAAGCATTTGCCAAAAACTGATCTGTACAAATGCAGGATATGCAATGAAACCTTCGAGGGGTATAGGTTTAAAGAGGCACATTTAGTGTCAGTACATGGATTGAAACTGCCTACACCTGAGTGTAAAGCATGCAATAGAATATTTAAGAACAGACAAGCTTTATACGTTCATACCAAGAAATTCCACCTAATGGAGAGAAGACATAAATGTTCAGAGTGTGATATGAGTTTCTTCAGAAGTAAAGATCTCAGCGCTCATATGGTGATACATACGAAAGCACAACCTTATAAATGCACAATTTGCCCAAAAGCTTTTGGCCGAGCATATTCACTGAGAGAGCATTTGAAAATTCACAACAACATCAAACGCTTCAAATGTGAGCACTGCGGACATGCGTTTGTGCAGAAATgtcgTCCTGTAGGAACAGTCAAAACGAAGATCAAAAGAAATCAACCATGTGAATCGGATCATCCAAAAATCCGAAAGGGCGAACAGACTTCAATAATTCCACTCAAAACGAAGGCCTTACCTAAACACCGAGCGAACATAAAAGAGGTTATGCTTTCTTCTAACGCTACCCCTATAAGACGATTCGGAGATATGGGCTACATGTGTTGTTACTGCGATGATCAGTACCTTGAGCCAGCAGAACTAAAGAAGCATACTCTAGAAACTCATccagatataaaaaaagctttctTTATCACGAAATTGGGTAAAGATCGATTTGTAGTCAAATTGGATATAACCGGGCTACAATGCAAAATTTGCTATCGTTATATTAACACAATTGAACAACTAATGGATCATTTAAGAGTTGATCATGAGAAACCAATACATACGGATATTAAAAACCATATCATACCTTTCAAATTTGTCACAGAAACATTACAGTGTTGCATATGTAATAATACGTTCAGCAAATTTAAGATTTTACTTGAACATATGAACACACATTACAGGAACTATATCTGCAGTATATGTGATGTAGGATTTGTCAACGCTGTGAATCTAACAAATCATATGCTGACTCACGATAACGGAATTTTCAAATGTGATCATTGCTCTCAAGTATTTAACACTAAAAATAAGAAACGATTACATGAAAGAAATCATGGTTTTAAATCTCTGCTATTTAAATGCGGTCACTGTAATATAACTTTTAACGAATATAGAAAGAAAGAGGCACATTTAGCGTTGATACATGGACAAGCACATAAATGTCAGGCATGTTCCGCAgctgaaaataaaatcgaaacAGAAGAAAATGAATCCAGTTCTCCAATTAATAATGAAGTAACGTCTTATAAATCGCAACCATTTCGTAGAAATGTTGATCTGAAAAAACATCGCAGTAATATTAAGGAAGTTATGCTTTGGTCCAACGCTACGCCGATCAGACGTTGCGGTGATATGGGCTATATGTGCTGTCACTGCGATCAGCAATACAGAGAACCCgcagaattaaaaaaacactCATTGACAACACATCAAGACGTTTGGAAagcttattttttcaaaaaacttCGCATGGATCGATATTTCATTAAACTGGACATCACTTCGCTAAAATGCAAGATCTGCGACCAAAATATCGATACTATAGAACAATTGCTACATCATCTAAAAACTGAGCATAAGAAAACGGTTTACACTGATCTTAAGAATCATATTATCCCTTTCAAGTTTAATACTGATGTACTCCAATGCTGTATATGCATTAAAACTTTTAGTAGATTCAAAATGCTTCTGGAACATATGCATATACATTACAGAAATTACATATGTGATATATGCGACTCaggttattttaattacattagcCTCACGAGCCATAAGCTCACTCACGGCACAGGAACGTTTAAATGTGAATATTGCCCACAAATTTTCAACTCCAAAGATAAGAGACGACTCCATGAAAGAAAACACAGAGATAAGCCATTACTCTCGATGTGTGGATACTGCAATGAGGGTTTTAGCGATTTTCGGAAAAAAGAAGCGCATATGGTAGCATTACATGGATTGAAAATACCCACAGCCATATGTCAATCATGTGATAAAGTTTACCCTGATAGAAATAAACTACAAGCACATATCAAGAGAGTACATTTAATGGAGAAACCAAAAAAGTGTTCCGAATGCGAAATGAGCTTTTGTACTACGGTAGAGCTAAGGAACCACATGGTAAAGCACACAGGAACAAGAGCTTACTCCTGCAATGTTTGCTCAAAAGCTTTTGGTAGGGAGAGGGCTTTGAAAGAGCACATGAAGATACATAATGATACGAGAGCATTTAAATGTAACCAAGTTCCCGTTACAGTCAAGAAAGAGAAAGATGTTAGCACTCCAAAAACTAAGGTGATCACACTGAAAAGTGAAAATACAGCAGTAGAAACCAAcgtacaaaaacaaaaactgcTAAGATGGAAGAAATCCGAAAAGCACCTCAAAAACATCAGAGAAATATTAAAATGCACTAACGCCACTCCAATACGGAGATACACTGGTATAGGATATAATTGCTGCTATTGTGAAGAACAGTTTCCAGAAGCAAGTACTCTTAAAAGGCATACAATAGATACCCACGAAGATTTATCTCAAGCGGATTTCATGAAAGTCAAGTTCACAGACTACGTGGTTAAATTAGACATTACGAATCTAACTTGTAAGATTTGTAGCGAATCTATTGATACTTTGGAACAAGTTATGGAACATTTAAGAGATCAGCACAAGAAAACCATATTTGTAGATATCCCTAATCACATTTTACCTTTTAAATTCGATGATGAAAGTTTAAAATGTTACATGTGCTTAAATGTCTTTAACAAATTCAAAGCACTTTTAGAGCACATGAATATACATTACAGAAATTatatttgtgaaatttgtgACGCTGGTTTCGTAAACAATCATGGAATTCACAACCATAAACCGTCACATAAAAATGGTTCGTACCGGTGCCAATATTGCCCAAAAGTCTTTAAAACTAATAGGAATAAAAACAGTCATGAAAGTAGAGTCCATGTTCTTGCTCGCTACGTGTACAAATGTCCATTTTGTACCGAAAagttttacaatataaaatttaaatacgaCCATATGGAGGAGATACATGGAACAAAAACGACTAATTATAAATGCAACGCTtgcgataaaatatttaaaacttcgACTCAATTTAGAAGACACACAAGGAGAGACCATTTACTGGAGCGTTCGCATAAATGTACGGAGTGCGATAAAGAGTTTTTTACTAAAAGGAGTTTAACAAGCCATCTTATCTCGCATACGGGTGCTAGGGAGTTTCAGTGCGATGTTTGTTTGAAGTCGTATGGAAGGAAGAAAACACTTCGGGAACACATGCGGATACATAATAACGAGAGGAGATTCAAATGCGAGCGATGTGGCCAAGCTTTTGTACAAAAGTGTAGTATGAAGGGTCATATGAAGTCGAAACATGGAGAGCATGGAGATTAG
- Protein Sequence
- MEVKPEDSTLHNSNTKKASTTTSNAKNKKVAKIASNTKNKTVTTTSNHSKNVKDYTSKSSDSSNDKETTESSDSNKEKDTTESSDLNKEKVTSKSKKIPLVSTSRKEIHKHRTNIAEVLLYSNATPIRRFEDMGYQCCYCKDQYTLPADLKKHTLETHRDQDVRKACFMKIGMEMLVVRLDTTALQCRICNQNIDTLELLLEHLKSVHHKTIHTDIKNHMTAFQFVTEMPQCSICKSTFNKFKLLLEHLNLHYRNYICELCDTGFTTIRSLKKHMREVHSTGTFNCDYCSRVFENAAKKKTHERTKHLPKTDLYKCRICNETFEGYRFKEAHLVSVHGLKLPTPECKACNRIFKNRQALYVHTKKFHLMERRHKCSECDMSFFRSKDLSAHMVIHTKAQPYKCTICPKAFGRAYSLREHLKIHNNIKRFKCEHCGHAFVQKCRPVGTVKTKIKRNQPCESDHPKIRKGEQTSIIPLKTKALPKHRANIKEVMLSSNATPIRRFGDMGYMCCYCDDQYLEPAELKKHTLETHPDIKKAFFITKLGKDRFVVKLDITGLQCKICYRYINTIEQLMDHLRVDHEKPIHTDIKNHIIPFKFVTETLQCCICNNTFSKFKILLEHMNTHYRNYICSICDVGFVNAVNLTNHMLTHDNGIFKCDHCSQVFNTKNKKRLHERNHGFKSLLFKCGHCNITFNEYRKKEAHLALIHGQAHKCQACSAAENKIETEENESSSPINNEVTSYKSQPFRRNVDLKKHRSNIKEVMLWSNATPIRRCGDMGYMCCHCDQQYREPAELKKHSLTTHQDVWKAYFFKKLRMDRYFIKLDITSLKCKICDQNIDTIEQLLHHLKTEHKKTVYTDLKNHIIPFKFNTDVLQCCICIKTFSRFKMLLEHMHIHYRNYICDICDSGYFNYISLTSHKLTHGTGTFKCEYCPQIFNSKDKRRLHERKHRDKPLLSMCGYCNEGFSDFRKKEAHMVALHGLKIPTAICQSCDKVYPDRNKLQAHIKRVHLMEKPKKCSECEMSFCTTVELRNHMVKHTGTRAYSCNVCSKAFGRERALKEHMKIHNDTRAFKCNQVPVTVKKEKDVSTPKTKVITLKSENTAVETNVQKQKLLRWKKSEKHLKNIREILKCTNATPIRRYTGIGYNCCYCEEQFPEASTLKRHTIDTHEDLSQADFMKVKFTDYVVKLDITNLTCKICSESIDTLEQVMEHLRDQHKKTIFVDIPNHILPFKFDDESLKCYMCLNVFNKFKALLEHMNIHYRNYICEICDAGFVNNHGIHNHKPSHKNGSYRCQYCPKVFKTNRNKNSHESRVHVLARYVYKCPFCTEKFYNIKFKYDHMEEIHGTKTTNYKCNACDKIFKTSTQFRRHTRRDHLLERSHKCTECDKEFFTKRSLTSHLISHTGAREFQCDVCLKSYGRKKTLREHMRIHNNERRFKCERCGQAFVQKCSMKGHMKSKHGEHGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -