Lqua022362.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754902.1:3338305-3348687[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.8 3.6e+03 -1.4 0.2 18 26 63 71 59 73 0.81 2 10 0.73 9.4e+02 0.4 7.5 9 30 222 244 220 279 0.82 3 10 0.25 3.2e+02 1.9 0.7 18 26 291 299 287 303 0.83 4 10 6.3e-07 0.0008 19.9 4.5 6 44 307 340 302 340 0.83 5 10 1.1e-05 0.015 15.8 0.2 16 43 345 369 341 370 0.91 6 10 3 3.8e+03 -1.5 1.2 17 40 375 397 373 401 0.69 7 10 7 8.9e+03 -2.7 4.5 10 43 401 439 391 440 0.77 8 10 2.7 3.4e+03 -1.3 2.7 16 43 436 460 416 461 0.81 9 10 0.79 1e+03 0.3 0.6 18 41 470 490 464 492 0.80 10 10 3.4 4.3e+03 -1.7 4.4 18 43 498 520 486 521 0.78
Sequence Information
- Coding Sequence
- ATGGCATCCTATTACTTAGTCTTAAATACTACGGAATATGAATTTAACCAAATTACTACTACAATGGACAAAATATGCGTGTGTTGTTCATCACGAAATGATCATTTGATTAATATTAAGACATGTAAACACACAACATTCCTGAGGAGTATCAATGAATTATTGtttgaaCTTCAAGATGCCCATGTGTGCGTCCTATGTCACAATTTGCTGAAAAAAATTGATGCATTCCAAAAACAAGTGACAGAGTCATTGGCACTGCTGACTGATAAGACGCGTACACGGACAGTTAACAAGCTACATAACCTCAAAAGGTCTCCTTTACACTATACAGACTCCACACAACCGGAGTTCGAAGTCAAACCAGAAGTCGTAGAGATCGAAGTCGAAGAAACAGACTTGAATACCGACATCAAAGTAGAACATGATGACTCCGACTTCGAACCGCTGGAGCCTGTATCTCGAGCTAAAAAGAGAAAGAGAGCGATACATGTTGACAAGTATGAAGGGAAGATACGAGTAGTGATGCTAACGTTAAAAGAGTTGAACGAAGAAAGAGAAGCATTGGCTAACCGGCCCCAGTATATAAACTTGCCTTATAAGTGCGAAGACTGCATCACAGCATTTGACCATGAAAATACTTGGAAGACGCATATGGAACAGCGACATACCATGAACAAGGACAGTTTTCAGTGCGAAATTTGCAAATCTGTGTTGAGCTCTAAAAGCTCCTACAATGAGCATACGAAGAGGCATGTAAGGAGGCTGGAATGTGTGGAATGTGGTAAGCGGTATAGCAACCTCCAGCCAGCCATCCAACACTACGACGAGAAGCACCTGCCCGCCGGCTCGTCCCTACAGCGGGGCTACACGTGTCGGCACTGCGGCTTTACAACCACAGTAAATCGCATATACCGTTATCACCTGGATAAACACAAGCAGAAACCGGAGTGCAATATCTGCGGGAATACTTTTGTTAACGTAAACTGTCTCAAAAGCCACATGTATACAGTGCACAAGCAGTCATCTCGGGTGTATCGCTGCGAGTCGTGTGACAAGACGTTCAGCGCCAAGTCGGGGCTGATGGCGCATATGCGGTCGGTCCACGCCAACGCACCGCGGGCCTACTGCGAGCCGTGCGGCACGCACTACCGGACGTTCCACGCGCTCAAGGCGCACCTCAGCTCGCACTCCAAGCATATCAGCGACAGTGATAAACGGTACATTTGCGATGAGTGCGGTGCCAGGTTTGTGAAGAAGTGCAGTCTGCAGATACACATCAACTGGGAACATCTCAAGGTGGACAAGCACCGGTGTCCCGAGTGTACGAAGGTGTTCAAGTCCGCGTCAGCTGTCCGCCGCCATGTCAACTATGTCCACAACAAACTGCGGCCACCGCGCAACAAAATATGCCATTTCTGTGGACAGGGATTCAccaCGCAGACCATCTTACAATCCCACCTGCGCACGCACACGGGCGAGCGGCCCCTGCAGTGCCACCACTGCCCGGCGACGTTCGCGCACTCCGGCGCATTCTACACTCACATGAAGCTTAAACACGCTGCActtaagaaataa
- Protein Sequence
- MASYYLVLNTTEYEFNQITTTMDKICVCCSSRNDHLINIKTCKHTTFLRSINELLFELQDAHVCVLCHNLLKKIDAFQKQVTESLALLTDKTRTRTVNKLHNLKRSPLHYTDSTQPEFEVKPEVVEIEVEETDLNTDIKVEHDDSDFEPLEPVSRAKKRKRAIHVDKYEGKIRVVMLTLKELNEEREALANRPQYINLPYKCEDCITAFDHENTWKTHMEQRHTMNKDSFQCEICKSVLSSKSSYNEHTKRHVRRLECVECGKRYSNLQPAIQHYDEKHLPAGSSLQRGYTCRHCGFTTTVNRIYRYHLDKHKQKPECNICGNTFVNVNCLKSHMYTVHKQSSRVYRCESCDKTFSAKSGLMAHMRSVHANAPRAYCEPCGTHYRTFHALKAHLSSHSKHISDSDKRYICDECGARFVKKCSLQIHINWEHLKVDKHRCPECTKVFKSASAVRRHVNYVHNKLRPPRNKICHFCGQGFTTQTILQSHLRTHTGERPLQCHHCPATFAHSGAFYTHMKLKHAALKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909151;
- 90% Identity
- iTF_00909151;
- 80% Identity
- iTF_00909151;