Lqua016427.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- clz9
- Assembly
- GCA_963576445.1
- Location
- OY754892.1:12253479-12254718[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-07 0.00011 22.4 0.0 4 42 19 58 16 61 0.90 2 2 5.9 2.5e+03 -1.3 0.0 22 33 158 169 145 173 0.82
Sequence Information
- Coding Sequence
- ATGCCGCGAGTATATGTTAAAAAAGGGACAAGATCAAGAGAGGTCGATGAAATTGCTATGCAGTCGGCGATTGAAGAAGTACTAGATAAAACGTTGTCCATCAGAAAATCTGCAGAAAAATATGGCTTAAAACCTAGCACACTTGAAAGCCGCTTGATGAAGTTGAAAAACTCTTCTGAGGAAGAGAGAAATAACTCTCTAAAACGTGTGTTTGCTTCAAAATATAGCtctaatcaaatatttacaattgaGGAAGAGACTTTATTGAACAAgtacattttaaaatgttctCGAATGCACTATGGGCTAACTATTGAACAAGTGAGAAAATTGGCATACGAATTTGCTAaggctaataatataaaatatccaCCTAGTTGGGATCACAATAAATTGGCAGGGAAAGATTGGATGGAATGCTATCGTAAGCGGAACAACAATTTGAGTCTGAGGAAGCCTGAAAACACGAGTGCAGCAAGATCTTATGGATTCAACAAAACGGCCATAGAAtctacaattttgatgagtccGGGATATCGACAGTGCTCAGCACGCCTAAAGTGTtggctgaaaaaaaaacaaaaacaagttgGCCAATTTGTATTGGCTGAAAGAGGAGAACTGGTTACGTTTGGGGCGATCATATCAGCAAGTGGTAACACCATTCCGCCCTTATTCATATTTCCTAGGGTTCATTTCAAGGATTATTTCATGACGGATGCCCCGGAAGGCAGCCTAGGAGCAGCTTCGAAGAGTGGCTGGATAAACGCCAATATATTTTTGGAAGTACTGCaacatattaaaaagaaatcatgCTGCACCAAAGATAATCCCATTCTACTACTGGTCGACAACCATGAAAGTCATGTGATGATCAAAGCTGTGGATTACGCACGTGAACACGGCATTATTTATTTGTCATTCCCACCCCACACAACACATCGTCTACAACCGTTAGACGTGGGAGTATTTGAACCTTTCAAAGCCAAGCTGAAGGTAGCTTTTAATGATTGGCACGTGAACAATGCGGGAAAAACCCTCAATATATACAATATACCAAAACTGGCCAAAATTGCATATTTTGATGCATTCACTTCCAAGAATATAACGAATGCCTTCGAAAAAACCCCTCCGGCCATATTGGCAACCGAGATTCACAACcagtttttgaaaaagaattaa
- Protein Sequence
- MPRVYVKKGTRSREVDEIAMQSAIEEVLDKTLSIRKSAEKYGLKPSTLESRLMKLKNSSEEERNNSLKRVFASKYSSNQIFTIEEETLLNKYILKCSRMHYGLTIEQVRKLAYEFAKANNIKYPPSWDHNKLAGKDWMECYRKRNNNLSLRKPENTSAARSYGFNKTAIESTILMSPGYRQCSARLKCWLKKKQKQVGQFVLAERGELVTFGAIISASGNTIPPLFIFPRVHFKDYFMTDAPEGSLGAASKSGWINANIFLEVLQHIKKKSCCTKDNPILLLVDNHESHVMIKAVDYAREHGIIYLSFPPHTTHRLQPLDVGVFEPFKAKLKVAFNDWHVNNAGKTLNIYNIPKLAKIAYFDAFTSKNITNAFEKTPPAILATEIHNQFLKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637555;
- 90% Identity
- -
- 80% Identity
- -