Lqua008554.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754882.1:13270737-13301136[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-08 1.4e-05 25.2 0.0 2 38 437 472 436 477 0.90 2 2 4.2e-09 1.8e-06 28.0 0.1 4 39 538 572 537 577 0.94
Sequence Information
- Coding Sequence
- ATGATACCATCTGGACATAAGCACAAGTTGCTTATGTTCAGAGGCTACACTTACTCGCAGATGGGCACTGATCGCCGATGGTACTGCTCCAAGTGCTTGTGTGGATGCAAGGCTAAGCTGACCCTGGACGCTAATGGCAAGATATCTTATATCGAAAACGAGCATGACCATAAACCCCCCACGTATGTTGTTACGCaGTACATCTTGATACCATCTGGACACAAACACGAATTGTTGATGCTGAACGGTTACACTTTCTCAATGATGGGTAAGGGTCGCCGTTGGTACTGCTCTAGAAGAATAGGTGGATGCAAAGCTAAAGTGTTCCTAGACTCCAACTACAAAATTGAAGTATCAGATACTATACACAACCATACTCCTCCTCAATACCATGTCACGGCCAAAGGgagatatatacctataaaagAATACAAGTTTATATCAACTGGTAGCAAGAACAAAAAGCAGTTAATGTTGTTTCGAGGGTACACATTTTCGCGCATGCATAAAAACCGCTATTGGTACTGCTCCAAGAGAATACTGCAGAAATGCAAAGCGAAGGTGTTCCTGGATGCTAATGACAGGATATATTACGCCTGCAACGAGCATACCCATCCAGCACCAATGTACCACATAACGAATACTGGAGAGCAGAAATGTAGAGATGATAGAATATCCGCAGACTACAATTTTATTCCAAGCGGCCAAAAAAATCCATTGCTGATGATTGGAGGGTATACCTTCGCTCAAGTGCATCCTCGTCACTACTACTgctcaaagaagaagaaaggaTGCAAGGCTAAAGTCCGTTTCGAAGCTGACGAGAGCACGATACTGTTCGCCTACAATGAACATAACCATGAACCACCAGCTTATTACGTCACAGAATCTGGAAATTACGTTTTTACGAAATATAATCAACCTCGGCCATTACTTATTCATTTGTATGGCAACAAACCTTCGTATGTATATAAAGGTTACACCTTCTCCTTCGAGAAAAACTCCGCAATAATGAGATGTTCGCGAAGATTCCGTGGTGCTTGTGACGATATTGCTGCATTTGAACGTGGGATCTGCAAAGTATTATACAAAGGCTACACTTACTCAAGGGTTAATAACAGGGCTCTTATGTTGAGGTGCGCGTGTCGCTTCAAGAGCAAATGCGAAGCCAGGATCAGATTCACTTACGATTGGAAATTGAAGATAATATTCGCTGAACATAATCATCCACCGCCTAAGCCCAGGCGGGTGGGATTGTATTCCGTTCCTGTTCCCAGGATATATTTTACTATACGCCGAAATTACGATGAAAAGCAAATACAACAGGCAATCGATGCAGTTAACAATGGAATGAGTTTGAATGCAGCATCTATAAAATACAAAGTACCCAGAACAACAGTTGTTTACAGAATGAGTGGCCTCTTGGGTCGGCGCACGCGCATGTCAACTACAGAAGAAACTGATTTAGTCAATTGGATTCAAATGAGCAACAGTGGTTGCCTATGGTCCAAAACGGATTTAAGAGCGTTTGTTGAACaatatttaaaagataaaaatatggaGCATCTATTCAAAGATGGTATCCCAGGGCACCGAAAATACGATGTAAACCAAATACAGAAGGCCATCGATGCTGTTAACGAAGGCATGAGTCTGAATGCAGCAGCTATAAAGTACAAAGTTCCTAGAAAAACAATAGTTTACAGAATGAGAGGTCTTGTGGGTCGACGCACACGAATGTCTAACGATGAAGAAACAGAATTAGTCAGCTGGATTAAACTGTACAACGGTGGATATATTAAAGACTGGCATTGGTTGGTCCAGGATAATACGGATACTTTGCATTTACTGACTGTAAAAAACGAATCCACTATAGGGCCCTGCTACAACAAACCTAGTCGTTCGCATACCGGTAAAAGAAAATGGCTAGAAGAAGAGGCGAAAGACCTCGTATTTTGCTACTACAAAGCAAGGACTAAAGattatgTCTTCATGTTGCCACAAGAGAAAATCTCCAGACACAAAGATGTCCCCATACCCTTGGAATGTGGTCCTGATAAACACGGTGTAGCTTCCAAAGGTTCTGAATATGTGAAAAATGAGAGTGAAACAGATTGTAATTTATTCACTGATACAGTAGAGTTACACCAGACGAGTTCGTCGCCAAAAAAGAATTATATCAATTATGATAATTGGACAGATGTAAAGAGGAAACGCTTAAGAAATCAAGGAAAATCTTACTTGTCGAGAAAAGGTGTTATCGTTCCTGCAAAAACCATGGGTCCACCATGTTCTTGCATCTATAAATGTTACACGAAACTCACTGACAATGAACGTCAGCAAATGTTTGATAAATATTGGCAACTAGGCAACCGAGAAAAACAATGGTTATATCTTGTGAAATGTATAACTAAAGCAACTAAAAATCGTGGTCATGCCAAGCTCAACTCATGTCGCCaatttacttacaaatattacTTGCGAGACGATAAATCGCAGAAAATAGAAGTTTGTAAGAAGATGTTCCTCAGTACTTTCTCTATTGGTGATAAAATTATACGAACAGCATGGATCAAGTACGATGGCAATAATAGTATTCAAAAGGACATGAGAGGACATCACAAACagtaTGTCTTCATATTGCAACAAGAGAAAATCACCAGATATGAAGATGTCCCCATACCCTTGGAATGTGGTCCTGATAAACACGGTGTAGCTTCCAAAGGTTCTGAATATATGGAAAATGAGAGTGAAACAGATTGTAATTTATTCACTGATACAGTAGAGTTACACCAGACGAGTTCGTCGCCAAAAAAGAATTATATCAATTATGATAATTGGACAGATGTAAAGAGGAAACGCTTAAGAAATCAAGGAAAATCTTACTTGTCGAGAAAAGGTGTTATCGTTCCTGCAAAAAACATGGGTCCACCATGTTCTTGCATTTATAAATGTTACATGAAACTCACTGACATTGAACGTCAGCAAATGTTTGATAAATATTGGCAACTAGGTAACCGGGAAAAACAATGGTTATTTCTTGTGAAATATACAACTAAAGCGACCAAAAATAGTGGTCATGCCAAACTCAACACTCGCCaatttacttacaaatattacatGCGAAACGATAAATCGCAGAAAATAGaagtttgtaagaaaatgttcCTCAGTACTTTCTCTATTAGTAATAACGTTATACGAACAGCATGGATTAAGTATGATGGCAATGATGCTATTCAAAAGGACATGAGAGGGCATCATAACCATCACAAGATAGTTATTGATAATGAAATGATAACATCTGTTTGCGAACACGTAAAATCTGTAATACATAAAGACCCCCACGATAAAGGAGATGCTTCAGGAAAGGTGTTAGTGAATGGTGTGGGAATACCTAATTTCAGGAAAATGTATAAATTGTATGAAGagtaTGTCTTCATATTGCCACAAGAGAAAATCACCAGACATGAAGATGTCCCCATACCCTTGGAATGTGATTCTGATAAACACGGTGTAGCTTCCAAAGGTTCTGAAAATGTGGAAAATGAGAGTAAAACAGATTGTAATTTATTCACTGATACAGAAGAGTTACACCAGACGAGTTCGTCGCCAAAAAAGAATTATATCAATTATGATAATTGGATAGATGTAAAGAGGAAACGCTTAAGAAATCAAGGAAAATCTTACTTGTCGAAAAGAGGTGTTATCGTTCCTGCAAAAAACATGGGTCCACCATGTTCTTGCATCTATAAATGTTACACGAAACTCACTGACAATGAACGTCAGCCAATGTTTGATAAATATTGGCAACTAGGCAACCGGGAAAAACAATGGTTATATCTTGTGAAATATACAACTAAAGCGACCAAAAATCGTTGTTATGCCAAACTCAACACATATCGCCAATTCACTTACAAATATTACATGCGAAACGATAAATCACAGAAAATAGaagtttgtaagaaaatgttcCTCAGTACTTTCTCTATTAGTGATAACGTTATACGAACGGCATGGGCTAAGTATGATGGCAATGATGGTATTCAAAAGGACATGAGAGGGCATCATAACCATCACAAGATAGTTATTGATAATGAAATGATAACATCTGTTTGCGAACACGTAAAATCTGTTATACGTAAAGATCCCCATGATAACGGAGACGCTTCAAGAACGGTGTTAGTGGATGGTGTGGGAATACCTAATTTCAGAGAAATGTTTAAATTGTATGAAGATTGGTCATATCTTAACAATTATGTTAATAAGGCTACAACCTATAGACATTATACAGATATAGTGAAAACTAATTTCAATGTAAATtacttaaacattaaaaaatctaaataa
- Protein Sequence
- MIPSGHKHKLLMFRGYTYSQMGTDRRWYCSKCLCGCKAKLTLDANGKISYIENEHDHKPPTYVVTQYILIPSGHKHELLMLNGYTFSMMGKGRRWYCSRRIGGCKAKVFLDSNYKIEVSDTIHNHTPPQYHVTAKGRYIPIKEYKFISTGSKNKKQLMLFRGYTFSRMHKNRYWYCSKRILQKCKAKVFLDANDRIYYACNEHTHPAPMYHITNTGEQKCRDDRISADYNFIPSGQKNPLLMIGGYTFAQVHPRHYYCSKKKKGCKAKVRFEADESTILFAYNEHNHEPPAYYVTESGNYVFTKYNQPRPLLIHLYGNKPSYVYKGYTFSFEKNSAIMRCSRRFRGACDDIAAFERGICKVLYKGYTYSRVNNRALMLRCACRFKSKCEARIRFTYDWKLKIIFAEHNHPPPKPRRVGLYSVPVPRIYFTIRRNYDEKQIQQAIDAVNNGMSLNAASIKYKVPRTTVVYRMSGLLGRRTRMSTTEETDLVNWIQMSNSGCLWSKTDLRAFVEQYLKDKNMEHLFKDGIPGHRKYDVNQIQKAIDAVNEGMSLNAAAIKYKVPRKTIVYRMRGLVGRRTRMSNDEETELVSWIKLYNGGYIKDWHWLVQDNTDTLHLLTVKNESTIGPCYNKPSRSHTGKRKWLEEEAKDLVFCYYKARTKDYVFMLPQEKISRHKDVPIPLECGPDKHGVASKGSEYVKNESETDCNLFTDTVELHQTSSSPKKNYINYDNWTDVKRKRLRNQGKSYLSRKGVIVPAKTMGPPCSCIYKCYTKLTDNERQQMFDKYWQLGNREKQWLYLVKCITKATKNRGHAKLNSCRQFTYKYYLRDDKSQKIEVCKKMFLSTFSIGDKIIRTAWIKYDGNNSIQKDMRGHHKQYVFILQQEKITRYEDVPIPLECGPDKHGVASKGSEYMENESETDCNLFTDTVELHQTSSSPKKNYINYDNWTDVKRKRLRNQGKSYLSRKGVIVPAKNMGPPCSCIYKCYMKLTDIERQQMFDKYWQLGNREKQWLFLVKYTTKATKNSGHAKLNTRQFTYKYYMRNDKSQKIEVCKKMFLSTFSISNNVIRTAWIKYDGNDAIQKDMRGHHNHHKIVIDNEMITSVCEHVKSVIHKDPHDKGDASGKVLVNGVGIPNFRKMYKLYEEYVFILPQEKITRHEDVPIPLECDSDKHGVASKGSENVENESKTDCNLFTDTEELHQTSSSPKKNYINYDNWIDVKRKRLRNQGKSYLSKRGVIVPAKNMGPPCSCIYKCYTKLTDNERQPMFDKYWQLGNREKQWLYLVKYTTKATKNRCYAKLNTYRQFTYKYYMRNDKSQKIEVCKKMFLSTFSISDNVIRTAWAKYDGNDGIQKDMRGHHNHHKIVIDNEMITSVCEHVKSVIRKDPHDNGDASRTVLVDGVGIPNFREMFKLYEDWSYLNNYVNKATTYRHYTDIVKTNFNVNYLNIKKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -