Lqua008533.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754882.1:13020807-13022605[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.8e-15 4.2e-12 46.1 0.1 4 38 21 55 19 59 0.93 2 2 3.9e-11 1.7e-08 34.5 0.0 5 43 91 129 90 131 0.92
Sequence Information
- Coding Sequence
- ATGCCTCGTAATATATTATCGCCGAAACCAACCCCTAAGAGAAAATCTTGGGATCAATATGCTATGATTAAAGCAATAGAAGCTGTGAGAGAAAAAGAAATGGGACTAAACAAGGCTGCAAAACGCTATTCCGTACCCAAAACTACATTGCAAAGGCTAGTAAAAAGCGAATTGCCTCCAGAAGAGGTCGttaataaaaaattagTCATGGCTTTTACTATATCACCACCGAAGCCTGCCCCTAAGAGGAAGGCTTGGGATCAATATGTTATGGCAAAAGCTGTAGATGCGGTGAGAGGAAAAGAAATGGGAATATTCCAGGCTGCAAAACAATATTCTTTACCCGAAAGTACACTGCGTAGGTTAGTAAGAAGTGAATTACCAGCTAAAGAAGCTGTTGCAAAAAAACTAGGAAGAAAATCTATCTTCCCGCCTGCAATAGAAGAACAGTTGGTCCAACAGTTAATTTTAATGGAGAATGAAAAAAATGGTTTGACTCGAAGAGACGTACTACACCTTGCCTATCAACTGGCAACTGAACATAAAATTGACCATTCGTTCAGTAATGATTCTGCTAGTCATAATTGGGTGACTAGATTTTTGAATAAACACAGTGAAATTTCGGTTCGAAATCCTAATTAG
- Protein Sequence
- MPRNILSPKPTPKRKSWDQYAMIKAIEAVREKEMGLNKAAKRYSVPKTTLQRLVKSELPPEEVVNKKLVMAFTISPPKPAPKRKAWDQYVMAKAVDAVRGKEMGIFQAAKQYSLPESTLRRLVRSELPAKEAVAKKLGRKSIFPPAIEEQLVQQLILMENEKNGLTRRDVLHLAYQLATEHKIDHSFSNDSASHNWVTRFLNKHSEISVRNPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -