Lsem021817.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lithophane semibrunnea
Gene Symbol
nfxl1
Assembly
GCA_947363905.1
Location
OX376208.1:14191196-14193676[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 3 2.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 17 0.016 1.3e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 17 4.7e-07 0.0039 17.6 15.9 3 19 186 202 185 202 0.95
4 17 5.8e-07 0.0049 17.3 9.1 3 19 239 255 237 255 0.91
5 17 2.5 2.1e+04 -3.9 1.9 6 10 280 284 279 284 0.83
6 17 5.9e-09 4.9e-05 23.7 11.9 1 19 290 308 290 308 0.99
7 17 6.7e-06 0.056 13.9 18.5 3 19 345 361 337 361 0.88
8 17 1.9 1.5e+04 -3.4 0.4 7 11 365 369 365 369 0.84
9 17 0.0001 0.83 10.2 20.3 1 18 395 412 395 413 0.97
10 17 6.7e-10 5.6e-06 26.7 14.0 1 19 422 440 422 440 0.99
11 17 0.00031 2.6 8.6 6.4 9 19 488 498 486 498 0.89
12 17 0.11 9.4e+02 0.4 9.9 1 12 508 518 508 518 0.90
13 17 0.47 3.9e+03 -1.5 3.5 14 18 547 551 547 552 0.87
14 17 0.32 2.7e+03 -1.0 0.4 8 12 568 572 567 579 0.79
15 17 9.4e-06 0.078 13.5 5.2 1 11 588 598 588 599 0.97
16 17 5.5e-05 0.46 11.0 13.4 4 18 630 645 628 646 0.86
17 17 6.2e-06 0.052 14.0 12.0 1 18 687 705 687 706 0.89

Sequence Information

Coding Sequence
ATGGCGCGCCGATATAGAGACGCGGCTGCAAAATTGCAGCAAAACGTCCAGAAACATCTAAAAGTAATGAAAGAACTGTCGTCGTCTGAAGATGAGGATCCTTGCGAATCCAATGTCTTGGAAAGCATGTTCCAGAGCTACTGGCGCGGCGGCGGAGACACTCAAATGCTGAACAGGACCAAAAACCTCCTTGAAGAAGCCATGAGCGGCCGTTCTGTTACGTGTCTTATATGCATAGGATCGATAAAAAAATCGCACGCTATATGGACTTGTGATCATTGTTTTTCATATTTCCATCTGTCTTGCATTCAAAAATGGGCGAACGATAGTATAAGCTTGCGCAGTGAAGAAAGTACGGGCCCGATAGCTGTTATAAAACAACAGAAAATCGAATGGTGTTGCCCCAAGTGCCGAAACTCTTATTCTAAGGAAGAAATCCCACGTAAATATCGCTGTTTCTGCGGCCAAACTGATGACCCACCACACCATCCTTGGCTCATTCCTCACACCTGTGGTGAAGTCTGTGGGAAGAGGTTGTCTACTGGTGAAAATTGTAAACACAAATGCTTGCTGCTATGCCACCCTGGACCCTGCCCTCCATGCCCACAAACTGTCAATGGCATATGTTTCTGTGAGAAGGAACATAAGAGAGTTAGATGCAGCGCTGCTAAATGGTCCTGTGGCCAACTTTGTAAGAAAACTCTTTTGTGTAAGACTCATTATTGTGAGAATGTCTGTCATGCAGGTGATTGTGCTCAATGTAGCTACACTAGTATCCAGCAATGTCAATGTAGTTCAGAGAAAGCTAAAAGACCATGTAATGATCCATTCTGGCAGTGTAAGAAGCCTTGTAACAAGCTATTTTCCTGTGGCTATCATAAATGTGACAGAATCTGTCATTCAGGCAACTGTGGAGATTGCCCCAACTCTGGAACTTTATCATGTCCCTGTGGAGCTAACCAGCGCTTTGTCCAATGTCCAGATGTTATGGAAACCTGCCTAGGTACGTGTGGTAAAAGGCATGAAGATTGTGATCATAAGTGCCCCGAGAAGTGCCACAATGGTAACTGCCCACCTTGCCAAGTTTTAATTGAAAAGAAATGCCACTGCTCCACACATATAAGGGCCCTACCATGTAGCAAGGACTTTAAATGTGACACTAAATGTCGAGGAATTAGGTTATGTGGCAAACATGGTTGTGGAAGAAAATGCTGTAATGGAAACTGCCCCCCTTGTGAGAAGACATGTGACAAAGGCCTCCACTGTGGTAGGCATAAATGCACAAATATTTGTCATCGTGGACCATGCTATCCATGCCCTCTAGAATCCAAAGTAACTTGCAGATGCAAAGAAACTTACGTTAGAGTACCATGTGGACGGGAAAGGCAGACAAAACCTCCTAAATGCAACTTACCCTGCAAAATTAAATACAAATGTGGTCATAGTGAAGAAAATAAACACTCCTGTCATTTTGGTGACTGTCCACCTTGCAAAGCAATCTGTGACAAGCAGTATCCTAAGTGTAGTCACCATTGTAAAGCGGTATGCCATGAATATGTTGCTGTGCTATTCAAACAAGTTGAGAAACCTGCTACTCCTTGGGAGGTACAACCACCAAAGACTAAGATTATGACCTTAGATTGTCCACCATGTGAAACACCAGTACCAATGGTTTGTTTTGGAGAGCATGAGACAGACAAGCAGCCTTGCCACACAGCTTCACGAAGGCCTTGTGGAAGAGAATGTGGACGACCACTTGCTTGTGGAAACCATAAGTGCAATTTACTCTGTCATCTTTATAGCCCTGTGGCTGAATACCCAAATGTGCCTTCGACTTGTAAGCAATGTAACAGAGAATGTTCAGTTCAACGTCCTGAAAAATGTGCCCATAAATGTTCTATTAGGGCCTGTCATCCTGGTCCTTGCCAGCCTTGTGAAATACTTGAACGCTTAGCCTGCCACTGTGGCGTAACAGAGATATACTTACGCTGTCGAGAATTGTCTGCAGCTACCGAAGAGATGTTATCATGCAAGCAACAATGTCCTAAGAACTTAGACTGTGGCCATCGCTGCCGTAACACATGTCATTCAGGAGCTTGCGGTAACCAAGTATGTACTAAGAAAACTAAAGTGCTCTGTCCTTGTGGTTCTATAAAAAAGGAAGCCCCTTGCAACTCAGTTAGAAACGGAGACACTAAAATACTCTGTGACAATACCTGTGAAGCTAAGAAAGCTGCTGCTAAAATAGAACAAGAAAAAGAGAAACAGAGATTGAAAGAGCTAGAGGAAGAAAAGAATCGTAAAGAATTAGCAGAGTATGAATGGAAACTAAGCGGTAAGAAGAAGAAGTACAAGGAAAAGAAGATGGTTGTTGGTAATGATGACCAAGGATTCCTAAAGAGGTATTGGGTACCAATATCATCGTTCCTAGTTATGATGCTAGCGGCTTTTTACTATATATTTTATGTAGGATTAGAATAG
Protein Sequence
MARRYRDAAAKLQQNVQKHLKVMKELSSSEDEDPCESNVLESMFQSYWRGGGDTQMLNRTKNLLEEAMSGRSVTCLICIGSIKKSHAIWTCDHCFSYFHLSCIQKWANDSISLRSEESTGPIAVIKQQKIEWCCPKCRNSYSKEEIPRKYRCFCGQTDDPPHHPWLIPHTCGEVCGKRLSTGENCKHKCLLLCHPGPCPPCPQTVNGICFCEKEHKRVRCSAAKWSCGQLCKKTLLCKTHYCENVCHAGDCAQCSYTSIQQCQCSSEKAKRPCNDPFWQCKKPCNKLFSCGYHKCDRICHSGNCGDCPNSGTLSCPCGANQRFVQCPDVMETCLGTCGKRHEDCDHKCPEKCHNGNCPPCQVLIEKKCHCSTHIRALPCSKDFKCDTKCRGIRLCGKHGCGRKCCNGNCPPCEKTCDKGLHCGRHKCTNICHRGPCYPCPLESKVTCRCKETYVRVPCGRERQTKPPKCNLPCKIKYKCGHSEENKHSCHFGDCPPCKAICDKQYPKCSHHCKAVCHEYVAVLFKQVEKPATPWEVQPPKTKIMTLDCPPCETPVPMVCFGEHETDKQPCHTASRRPCGRECGRPLACGNHKCNLLCHLYSPVAEYPNVPSTCKQCNRECSVQRPEKCAHKCSIRACHPGPCQPCEILERLACHCGVTEIYLRCRELSAATEEMLSCKQQCPKNLDCGHRCRNTCHSGACGNQVCTKKTKVLCPCGSIKKEAPCNSVRNGDTKILCDNTCEAKKAAAKIEQEKEKQRLKELEEEKNRKELAEYEWKLSGKKKKYKEKKMVVGNDDQGFLKRYWVPISSFLVMMLAAFYYIFYVGLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00932106;
90% Identity
iTF_01440670;
80% Identity
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