Basic Information

Insect: Lithophane semibrunnea
Gene Symbol: -
Assembly: GCA_947363905.1
Location: OX376209.1:10508523-10509668[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00012 0.0091 16.9 1.9 1 23 147 171 147 171 0.92

2 7 3 2.2e+02 3.1 0.2 2 23 177 197 176 197 0.90

3 7 0.00013 0.0095 16.8 0.2 2 23 204 224 203 224 0.96

4 7 0.00027 0.02 15.8 1.2 1 23 230 252 230 252 0.99

5 7 5.3e-05 0.004 18.0 1.7 1 23 258 280 258 280 0.98

6 7 0.0013 0.097 13.6 0.7 1 23 286 309 286 309 0.93

7 7 0.0056 0.42 11.6 0.5 3 23 317 338 315 338 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00012	0.0091	16.9	1.9	1	23	147	171	147	171	0.92
2	7	3	2.2e+02	3.1	0.2	2	23	177	197	176	197	0.90
3	7	0.00013	0.0095	16.8	0.2	2	23	204	224	203	224	0.96
4	7	0.00027	0.02	15.8	1.2	1	23	230	252	230	252	0.99
5	7	5.3e-05	0.004	18.0	1.7	1	23	258	280	258	280	0.98
6	7	0.0013	0.097	13.6	0.7	1	23	286	309	286	309	0.93
7	7	0.0056	0.42	11.6	0.5	3	23	317	338	315	338	0.95

Sequence Information

Coding Sequence: ATGTCGGGTTCTTACTTTATGCTGCAATTACTGAAAAATATACGGCTTGAAAAGCACCATAGAAAATTGCCGAGACAAAGTACTACAACTCGTCAAGACAGCGAAATGGAAACAATCAGGACCACTAACAACAAATGTAGGCTTTGTTTAAAAGAAGGTAAGAAACCAATTTTCAATTCGGAAAGTAATTTTAACATTGCAGAAGCGATATGCACTTTTGCGGATGTACAATTAAATGAAAATGATGACTATCCTAAGCACTTGTGTACGAAATGCCACACTTTTCTTCAGAATGCAGTTACATTTAGGAAATCAGCCCAGGACACTGATAAACAACTTCGTCAGACCCCAGCTCGGGATTCTAGAGGAGAATCAGATGCAGGAAATGATCCTGACGATGATAATGGTGACACTGAAGAAGTTGTCCAAAAAGGCAAATACACTTGTAAACTGTGCAGCCTCAATTTCAAAACATCTAAAGACTTAATTGCACACAAAAGATCGAGAACTCACAAGAAGGTTCGTGTTCGGTGCCCTGTGTGCTACAGATTGTTAACAGCTCAATTATATCAGAAGCATGTAGCCAGACATCAGTCAGCATCTCACCTTGTTTGTGATATATGCGGGAAACTTTACCGTAAAGATAATTTGGTAAGGCACTTACAGCTTCACAGCTTCGACCTGCCATTCAAATGCCAGTTGTGTCCATACCGAGGACGCTTCATGGAATCACTAAAAATCCATATGAGAACACACACTGGTGACAAACCTTTTTCATGTGATAAGTGTGAGTTACGGTTTTTGACAAGAAGCAATCTGAACAGGCATCTATTAACCCATAAGAAGGAAAGACCGTTCAAGTGTCTTGAATGCGGAAGAGGTTTTTACACTAAGAGGGATATGGATGTACATTTCAAAGCTGATCATGCTGGACTGAGGGAGTTTGGGTGCAAGATGTGTGGCAATAAGTATGGTACTCGGAAGGCATTAATGAGGCATGAACTGAGAGTTCATAAGAGGGATAAGATGGCGAAGGGGCGGATGCCATTGTATCTTCAAGCTGGGTATCAAAAACAAGATGAAGTCATGTCTAGCATGCTGGTTGCTGTCAAACTGTTGTCAGATACAGCTACAATCCTCAGTTAA
Protein Sequence: MSGSYFMLQLLKNIRLEKHHRKLPRQSTTTRQDSEMETIRTTNNKCRLCLKEGKKPIFNSESNFNIAEAICTFADVQLNENDDYPKHLCTKCHTFLQNAVTFRKSAQDTDKQLRQTPARDSRGESDAGNDPDDDNGDTEEVVQKGKYTCKLCSLNFKTSKDLIAHKRSRTHKKVRVRCPVCYRLLTAQLYQKHVARHQSASHLVCDICGKLYRKDNLVRHLQLHSFDLPFKCQLCPYRGRFMESLKIHMRTHTGDKPFSCDKCELRFLTRSNLNRHLLTHKKERPFKCLECGRGFYTKRDMDVHFKADHAGLREFGCKMCGNKYGTRKALMRHELRVHKRDKMAKGRMPLYLQAGYQKQDEVMSSMLVAVKLLSDTATILS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00446600;
90% Identity: iTF_00374672;
80% Identity: -