Basic Information

Insect: Lithophane semibrunnea
Gene Symbol: -
Assembly: GCA_947363905.1
Location: OX376214.1:6538010-6544887[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.29 21 6.3 0.8 1 23 380 402 380 402 0.96

2 9 0.12 9.3 7.4 0.1 2 23 470 491 469 491 0.94

3 9 0.038 2.8 9.0 0.7 1 23 495 517 495 517 0.96

4 9 0.0031 0.23 12.5 1.7 1 23 523 546 523 546 0.85

5 9 0.049 3.6 8.7 1.1 2 23 553 575 552 575 0.91

6 9 1.6e-06 0.00012 22.8 1.3 1 23 581 604 581 604 0.98

7 9 6e-05 0.0045 17.8 1.8 1 23 610 632 610 632 0.98

8 9 1.8e-06 0.00013 22.6 1.8 1 23 638 660 638 660 0.99

9 9 4.5e-06 0.00034 21.4 2.8 1 23 666 688 666 689 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.29	21	6.3	0.8	1	23	380	402	380	402	0.96
2	9	0.12	9.3	7.4	0.1	2	23	470	491	469	491	0.94
3	9	0.038	2.8	9.0	0.7	1	23	495	517	495	517	0.96
4	9	0.0031	0.23	12.5	1.7	1	23	523	546	523	546	0.85
5	9	0.049	3.6	8.7	1.1	2	23	553	575	552	575	0.91
6	9	1.6e-06	0.00012	22.8	1.3	1	23	581	604	581	604	0.98
7	9	6e-05	0.0045	17.8	1.8	1	23	610	632	610	632	0.98
8	9	1.8e-06	0.00013	22.6	1.8	1	23	638	660	638	660	0.99
9	9	4.5e-06	0.00034	21.4	2.8	1	23	666	688	666	689	0.96

Sequence Information

Coding Sequence: ATGGCTACAGTTAAGAACAACGGGCCGATTATAGACCCAGCATTATGTCGATGTTGTAGGGCCATAAAAAAATGTCGAGTGCTCACAGCGGAGTATACTTGGATGGAGAAAAAGGAAATTTACGCTGATATGGTTATGGACTGCTTCGGAATACTGCTGTCACATGTCGATGATAATGAGAAAGACTGTGGTGTCTGCGCGACGTGTGTGGTACGTCTACGGGACGCATGTGCGTTCAGGCAGCAAGTGCTTCAGTGTGAAGAGCTGTTCCTAAGCGCTAAGCTTGAAGACAAGGATGCTTTAGCAGAATTTACAGAACCGAAGATACACAAGCCACAAATGGACATAGAGTTAAAGATTGAGCCTAAAGATGACTGCAGCGATATCTCGGGAGGCGCTGACCATGACGACGATAATATGTCCCTGGATTACCCCATTACAGAAGCCGTTGAAGGTAATTTAAACCTCATACTAGTATTCACGGAAGGGTTAGTTAGTGTTAGATTTAAGTCTAAAGACGACTACAGCGATATCTCCGGCGGGGCTGACCATGACGACGATAATATGTCCCTGGATTACCCCATTACAGAAGCCGTTGAAGGTAATTTAAACCTCATACTTGTATTCACGGAAGGGTTAGTTAGTGTTAGATTTAAGTCTAAAGACGACTACAGCGATATCTCCGGCGGGGCTGACCATGACGACGATAATATGTCCCTGGATTACCCCATTACAGAAGCCGTTGAAGATCACCCTGTAGATGAAGCAGAATCGAAGCCTCCTAAAGAAGAAGAGGCTCTAGAAAAACCAGAATTGCCTCTGGATGAAGACTCGAAGCTAGAAGATGATGATGATGATGAGAGCGACTGGTCGGCTTCTTCATCAGACTCTGATAAGCCCATCAAGAAGAAGGCGAAGAAGAAAGGCAAGACTAATGGAGCAGGAAAGAAGAAGAAGGTCACCGCTAAGAAGCAGAAAGCTGCATCATCAACAAAGAAATCACCGAAAACTGTAAAAAAACCGCCCGTTGAGAAGAAAAATAACTACGACCGGGATTTGGActgtatgtccgaagagaacctccttactatcatacagtattcatacgtttgccccttcaaaaatagaagaaacaactactactgtttttactgcaaggattactacccaaaacctgaagatttgagagaacacaccgtatcacatgacacaaaaccgttccaactattaatggggtataagaaaatgatcaaaattgacattacaaggatagactgcagactatgtccgacaaaaatagacgatttaaccgttttcaagcaacacatagaccaagtgcacggtaaaaagatatattttgaagcccctgacaaaatgttactgtacaaactaacttggaatgatttggtgtgcgttatgtgcaatgatgtcttcgaagattttaacacactcaacacccatatggtggaacatttcagtaactttacttgtgatatctgtggcgtatgcttccttgaaaaacctcgcttagacgcccatttgaaacgacataaagacgatgaacgacatacttgcgaagtctgcggcaaagtcttcaaatccaaccattataaggacatgcatgtggacatagtgcataagaaaaaggctataattcgatgtccgagatgtgatgaatgtttcatgtcctacgctctcaaaaacaagcatttgacagaggctcacggacaaaaacggacctacccttgtaatttatgcgataaagtatacaacagacagaaaacattaactgaacatcaacggaggaatcaccaaaaagtattgaaacatcagtgtgaatattgtgaccaaaggttctacctcccttcccggttaaaagaacatatggcaacacatactggtgagaggaacttccgctgtgagtattgtgaaaaaagttatcctaggttaaagtctttgcagtaccatatacggactcatacgaatgacaggaggtatcggtgtcacatatgtgggcaggcctttatacagaacgctagtatgaagtcacatataaagagccatcatccagagtgtgatattgaaggatgttacttttAA
Protein Sequence: MATVKNNGPIIDPALCRCCRAIKKCRVLTAEYTWMEKKEIYADMVMDCFGILLSHVDDNEKDCGVCATCVVRLRDACAFRQQVLQCEELFLSAKLEDKDALAEFTEPKIHKPQMDIELKIEPKDDCSDISGGADHDDDNMSLDYPITEAVEGNLNLILVFTEGLVSVRFKSKDDYSDISGGADHDDDNMSLDYPITEAVEGNLNLILVFTEGLVSVRFKSKDDYSDISGGADHDDDNMSLDYPITEAVEDHPVDEAESKPPKEEEALEKPELPLDEDSKLEDDDDDESDWSASSSDSDKPIKKKAKKKGKTNGAGKKKKVTAKKQKAASSTKKSPKTVKKPPVEKKNNYDRDLDCMSEENLLTIIQYSYVCPFKNRRNNYYCFYCKDYYPKPEDLREHTVSHDTKPFQLLMGYKKMIKIDITRIDCRLCPTKIDDLTVFKQHIDQVHGKKIYFEAPDKMLLYKLTWNDLVCVMCNDVFEDFNTLNTHMVEHFSNFTCDICGVCFLEKPRLDAHLKRHKDDERHTCEVCGKVFKSNHYKDMHVDIVHKKKAIIRCPRCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGERNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHICGQAFIQNASMKSHIKSHHPECDIEGCYF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00041202;
90% Identity: -
80% Identity: -