Basic Information

Insect: Lithophane semibrunnea
Gene Symbol: RREB1
Assembly: GCA_947363905.1
Location: OX376215.1:6187091-6209246[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0024 0.18 12.8 0.7 1 23 245 267 245 267 0.98

2 11 0.0038 0.28 12.2 2.5 1 23 274 296 274 296 0.97

3 11 3.7 2.8e+02 2.8 2.7 1 23 300 322 300 322 0.92

4 11 0.003 0.22 12.5 1.4 1 23 327 350 327 350 0.98

5 11 0.01 0.75 10.8 0.2 2 23 355 377 354 377 0.93

6 11 0.019 1.4 10.0 0.1 3 21 391 409 391 410 0.95

7 11 0.42 32 5.7 0.1 3 23 458 479 456 479 0.96

8 11 0.0057 0.43 11.6 0.1 2 19 495 512 494 516 0.92

9 11 1e-05 0.00076 20.3 1.0 1 23 522 544 522 544 0.99

10 11 9.6e-07 7.1e-05 23.5 2.5 1 23 551 573 551 573 0.97

11 11 0.0002 0.015 16.2 4.3 1 23 579 602 579 602 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0024	0.18	12.8	0.7	1	23	245	267	245	267	0.98
2	11	0.0038	0.28	12.2	2.5	1	23	274	296	274	296	0.97
3	11	3.7	2.8e+02	2.8	2.7	1	23	300	322	300	322	0.92
4	11	0.003	0.22	12.5	1.4	1	23	327	350	327	350	0.98
5	11	0.01	0.75	10.8	0.2	2	23	355	377	354	377	0.93
6	11	0.019	1.4	10.0	0.1	3	21	391	409	391	410	0.95
7	11	0.42	32	5.7	0.1	3	23	458	479	456	479	0.96
8	11	0.0057	0.43	11.6	0.1	2	19	495	512	494	516	0.92
9	11	1e-05	0.00076	20.3	1.0	1	23	522	544	522	544	0.99
10	11	9.6e-07	7.1e-05	23.5	2.5	1	23	551	573	551	573	0.97
11	11	0.0002	0.015	16.2	4.3	1	23	579	602	579	602	0.93

Sequence Information

Coding Sequence: ATGGATGGAGGCAGTGCCAACCAGGATTACAATGGTGGTGAAAACAGTGGTCAGCGCAGTGGTTCTGTACCACAAAATGTAAATTTTGATATTGCTGCATTCACTGTTAGCTTTCCTACTGAACCTGACGAATTAGTGAGTGATAATGAAGACACTGAGGGTCAGGAAAAAACTGCTGAAGATGTGTGCTGTTTATGTCTCTGCAGTGATAGAAAACTGTATACGATACCACCTCAAAATCGAACAACTTTCCAGGAAGTTATCAACAAACAGAACAATGGGCAACGCCTCGATGTATCTCTCATCGACACCACGCTAGCCGCACACAACCTTACAACAACCCTGCGGACGAGAACCTTCCAAGCAGATCACGCAGATTATCATTTTGTGTACTGCAGCGACCGAGACAGCAGCCCGAGGGCCAAGAAGAATAAACTAAAAACACACGAAATTCAACAAATTACTTTACCTAATTTAGATTTAAGAGACGATGACACACTTACATTTAATTATATAGAATCTAGCAACGATAATATTAAACAAAAAAAAGGAAAAAATGCAAAAAAAGTCAGAAAGAAAAAAGGTAAAATAGTAATAAAGAAAGATAAACGTTGCAAGCCAGCGAATGAAGTACTGAATAATGATATTTTTAATATCAAGGATTTAAATCAGGAGGAGCAAATGTATGAAGTTAATAAAAGAAAGTTTTCTACTAATTATAAGAATTCTGGATTTAAGTGTAATGAATGTTTTAAAGGGTTTCTGGATAAAGATGCTTATACAGGACATATGATAAGGCATACAGATCAATGTGGAATATACAGCTGTGCTATCTGTAAGATTCACTTCAAAAAGTTGCAAGCGCTCAGGAACCATACAACTAGTCATATGCAGAAGTTTAGCTGTCAGAGATGTAACTATGTTACTTTTAgaagGCATGCAGCTAAACTACATGAGGAATATCATAATGGCACTAAATATGTCTGTCCACATTGTATGGAGAATTTTGAGAAACTATCAACCTACATGAGCCACATTCGCATAAAGCACCCTTCAGACATCGTGTGTCAGCTGTGTGGGTACTCCTTCGTTAGCGAGAAAGGGTTAGGCCTTCATAAGAAGCTGAAACACCGGCTTGATGATCACCAAGTCCCTACAGACGGTCCGTGGTGCACCAAATGTGATCTACAATTTATAAGCAAGGAGGCTTTAGACAGACACGTGCAGTTATCAGCAAAACATAGTGGTGAAATAAAACCAAGCAAATCACATGACAGTCGTAACTATAGAGATCAAAAAACCGGTAAGATTCACAACGAGACAGAAAAGAAAAATAAACGGAACACATATAAGCCTGAAGGACCCATAGCTTGTGAACAGTGTGACATGCAACTGCCAGACCCTCTGTCATACTACAGGCACTTCAGAAGACTGCACCCGGACAAGAATCGAACCAACTACCCTTCTATGAAGTCGAAAAGCATGTGCGAAGTTTGCGGaaaaatgtttcagAGCCTAGCCCTCTTGCAAGACCACAGCTGGACCCATACAGACTCCAAGCAATTTAAATGCTCGGCCTGCGACAAGCAATTTGTTCGGAAATACAGACTTATTGCTCATCAGCGTGTGCATGGAGCTGCGAGAGGCAATCACACCTGCAGTGTCTGCTCCAAGAGTTTTACTACTGCAAGTAACATGCAGAGACATATGGTGAGTCACACCGGTCTCAAACCGTTCAAATGCGAGATGTGCGGCAAATGCTTCAAGCACGCGAGTGAGAAACGTGTTCATGTCACTTACGTGCATCTTAAGAAGCCGTGGCCGAAGCGAGCTCGAGGGAAGAGAAAGGATAATAGACAGAATCAAGCCACCACGCCGATGCCTGCGTCAGACATTCAACCAATGCAAATAAATATACAAATAGAAAATAAGCCAATGTATTATAATATTAAAATGTAA
Protein Sequence: MDGGSANQDYNGGENSGQRSGSVPQNVNFDIAAFTVSFPTEPDELVSDNEDTEGQEKTAEDVCCLCLCSDRKLYTIPPQNRTTFQEVINKQNNGQRLDVSLIDTTLAAHNLTTTLRTRTFQADHADYHFVYCSDRDSSPRAKKNKLKTHEIQQITLPNLDLRDDDTLTFNYIESSNDNIKQKKGKNAKKVRKKKGKIVIKKDKRCKPANEVLNNDIFNIKDLNQEEQMYEVNKRKFSTNYKNSGFKCNECFKGFLDKDAYTGHMIRHTDQCGIYSCAICKIHFKKLQALRNHTTSHMQKFSCQRCNYVTFRRHAAKLHEEYHNGTKYVCPHCMENFEKLSTYMSHIRIKHPSDIVCQLCGYSFVSEKGLGLHKKLKHRLDDHQVPTDGPWCTKCDLQFISKEALDRHVQLSAKHSGEIKPSKSHDSRNYRDQKTGKIHNETEKKNKRNTYKPEGPIACEQCDMQLPDPLSYYRHFRRLHPDKNRTNYPSMKSKSMCEVCGKMFQSLALLQDHSWTHTDSKQFKCSACDKQFVRKYRLIAHQRVHGAARGNHTCSVCSKSFTTASNMQRHMVSHTGLKPFKCEMCGKCFKHASEKRVHVTYVHLKKPWPKRARGKRKDNRQNQATTPMPASDIQPMQINIQIENKPMYYNIKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00122714;
90% Identity: iTF_00906455;
80% Identity: -