Basic Information

Insect: Lithophane semibrunnea
Gene Symbol: -
Assembly: GCA_947363905.1
Location: OX376185.1:14598822-14609646[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.01 0.76 10.8 3.9 1 23 233 256 233 256 0.96

2 12 0.0025 0.19 12.7 3.0 1 23 263 285 263 285 0.95

3 12 9.9e-05 0.0074 17.1 1.1 2 23 292 313 291 313 0.97

4 12 4.5e-07 3.4e-05 24.5 0.5 1 23 319 341 319 341 0.98

5 12 3.4e-05 0.0025 18.6 1.0 1 23 350 372 350 372 0.96

6 12 3.7e-05 0.0028 18.5 1.4 2 23 379 400 378 400 0.96

7 12 0.00048 0.036 15.0 8.8 1 23 406 428 406 428 0.99

8 12 6.9e-09 5.2e-07 30.2 0.6 1 23 434 456 434 456 0.99

9 12 7.9e-06 0.00059 20.6 1.0 1 23 462 484 462 484 0.98

10 12 3.7e-07 2.8e-05 24.8 1.3 1 23 490 511 490 511 0.98

11 12 4.9e-05 0.0037 18.1 0.5 1 23 517 539 517 539 0.98

12 12 0.0052 0.38 11.7 2.5 1 23 545 567 545 567 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.01	0.76	10.8	3.9	1	23	233	256	233	256	0.96
2	12	0.0025	0.19	12.7	3.0	1	23	263	285	263	285	0.95
3	12	9.9e-05	0.0074	17.1	1.1	2	23	292	313	291	313	0.97
4	12	4.5e-07	3.4e-05	24.5	0.5	1	23	319	341	319	341	0.98
5	12	3.4e-05	0.0025	18.6	1.0	1	23	350	372	350	372	0.96
6	12	3.7e-05	0.0028	18.5	1.4	2	23	379	400	378	400	0.96
7	12	0.00048	0.036	15.0	8.8	1	23	406	428	406	428	0.99
8	12	6.9e-09	5.2e-07	30.2	0.6	1	23	434	456	434	456	0.99
9	12	7.9e-06	0.00059	20.6	1.0	1	23	462	484	462	484	0.98
10	12	3.7e-07	2.8e-05	24.8	1.3	1	23	490	511	490	511	0.98
11	12	4.9e-05	0.0037	18.1	0.5	1	23	517	539	517	539	0.98
12	12	0.0052	0.38	11.7	2.5	1	23	545	567	545	567	0.97

Sequence Information

Coding Sequence: ATGAATGCGGAAAGTGTCCTGGAAGGCAGCACAAATATACATGAAGAAGACAAAGGAACCAGAGAAGACTACATTGAAATAGAAATACCGTACAACTTGTACCAATACCTTAGCTCAGACCACTGCAATGTTCAAAACATGTGTCGAATATGTCTCGCGACCGACAACGCGGTTCTATACCCATTAGTTGCTACCAAAGAAAACAATGTTTTAGCTCATATGTTTACGACATTTACTACTGTTCAACTGCTTCCAGGAGATGGCTTGCCTTCAAGCATATGTGAGCTGTGTCAGGCTCGGGTAGTTCAAAGCTATGAGTTCAAGATCAAGTGCGAGAAGTCAGACTGCATGCTTAAGTCAATACTGAAAGGAGAATTCATTACCAAAGAGGAACTACCTGATCATAGCATGGAAATAAAGCAAGAAGAAAAGTCAGAGGATAATAATAATGATTTACATAACAGCAATATTTATTTAAATGACATTATTGATGTTAAACAAGAAACAGAACTACTGGAAGACGTGCAATATTTAGAAGACCTCAGTGATAACAGTGATAGTGGTAACCTTTTTATAGTGCACAAAACAAGGAGTAAGAAAAAAAAAAAGCTCATTGATGATTATGATGAATCTAACCATCTAAAAGTTTCAAATAAGAAATTAAGAAGAAAACATGGCAATAAAAAAGAAAATGCTTTCATCTGCAAGATTTGTTCTAAGAAATTCCAAAATGTGAAATCATTCCATGCACATGTGAAGAGCAAGCACCCAAGCACCAAATATCTACATTTTTGTAACCAGTGCACAGAGTCATTTAATTCTGAACACGATCTTAAAGTACACGCGTCTATACACACTAAAGGAAGCAGTTGGAAGTGTAACCAATGTTCTAAGGAGTTTAGGGCGCGCGCAATGCTCCGGCGCCACATATCGCGGCACATGGAGTCCAAGCGTTTCTCTTGCGAGGTGTGCGACAAGACGTTCACCGAACAGTACGCATTACGACGACATGCGCGCGTTCACACCGGCGAGATCCTCGAGAAGAAACATGCCTGCACTATGTGTGATAAGAGATACAGTGAGAGCGGTCTTCTAACCGCACACATGTCCCGCCACATCGGGTTGCGTCCTTGCGAGTGCAGCATCTGCGGAAAACGGTTCCCATCGAACCGCCTGCTGTCGTCACACCGGCTCGTGCACTCGGATCGCAAGCCGTACACCTGCCAGTACTGCGATAAACGTTTCCGTCACGAGTCGACTCGCAACACACATCATCGTACACACACTGGAGAGAAACCTTATGTGTGCTCCGTGTGCGGGAAGAACTTCATACAAAACTCCAACCTCACGCTGCATATGAGGACACATACTGGCGAGCGCCCCTATTCATGTTCGATATGTGATCGTAAGTTCACTTCAGGGTCTACATTGAAAAGCCACGAACGAATACATTCTGGGGAACGACCATTCAGCTGTGAAATTTGTGGGAAAAGCTTCACGCGCAAGAACTTGAGCGCGCACATGCGCAAGCACACGGGCGAGCGACCGTACGAGTGCGGCGTGTGCTCCAAGAAGTTCGCCAACGCCACGCGCCTTCGCGACCACTACCGCGTACATACTGGTGAAAAACCATTCGACTGCTCAATGTGCACGCTAAAATTCGCTACGAAATCTCAACAGTTAAAACACTCCAAAACCCACCTAGCGAAAAAAAAGAGAGCACTCGTGCATGCTTCAGATAAAGACCGAGACAACCGTGGACTCTTCATATTACAACATGTTGAGCCTGTTCCCATCATTACTGATAGAAATATGTTCAATAAGGAGCACGGAGAACTAATAACAGTCAATGAACATTTAACCATTGACGAGTCGCCCGTAGGTCAATCCAAGGAACTGACACTGAACATTCTTCAAGAAGTCCCATTAGAAGTGACAGGAGAATTAGTACTACAGAACGATAATAACATGAAAAATGACCTTTTAGTAGTCGATAATAGCCAAAGTAACTACCAAAGAGGAGGAGGTATATGCTTGAATACTAGCAACGTGAATATCGTCGATGACGTCAACTGCGACGGTGATATGAACTTGGTGACGTTGAACGAGGGCGGCGTCAGCATTTCGACCGCGAACCTCGAAGGAACCACAGTGAAATTATACCAATTAGACCAAAGTTTAGTTCAAATACACAGCTCTGGAGGACAAGTCACTATTAGTAAGATAACTAGCAAAATGACTGCTAACTTTTAA
Protein Sequence: MNAESVLEGSTNIHEEDKGTREDYIEIEIPYNLYQYLSSDHCNVQNMCRICLATDNAVLYPLVATKENNVLAHMFTTFTTVQLLPGDGLPSSICELCQARVVQSYEFKIKCEKSDCMLKSILKGEFITKEELPDHSMEIKQEEKSEDNNNDLHNSNIYLNDIIDVKQETELLEDVQYLEDLSDNSDSGNLFIVHKTRSKKKKKLIDDYDESNHLKVSNKKLRRKHGNKKENAFICKICSKKFQNVKSFHAHVKSKHPSTKYLHFCNQCTESFNSEHDLKVHASIHTKGSSWKCNQCSKEFRARAMLRRHISRHMESKRFSCEVCDKTFTEQYALRRHARVHTGEILEKKHACTMCDKRYSESGLLTAHMSRHIGLRPCECSICGKRFPSNRLLSSHRLVHSDRKPYTCQYCDKRFRHESTRNTHHRTHTGEKPYVCSVCGKNFIQNSNLTLHMRTHTGERPYSCSICDRKFTSGSTLKSHERIHSGERPFSCEICGKSFTRKNLSAHMRKHTGERPYECGVCSKKFANATRLRDHYRVHTGEKPFDCSMCTLKFATKSQQLKHSKTHLAKKKRALVHASDKDRDNRGLFILQHVEPVPIITDRNMFNKEHGELITVNEHLTIDESPVGQSKELTLNILQEVPLEVTGELVLQNDNNMKNDLLVVDNSQSNYQRGGGICLNTSNVNIVDDVNCDGDMNLVTLNEGGVSISTANLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00375561;
90% Identity: iTF_01526323;
80% Identity: -