Lsem010378.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lithophane semibrunnea
Gene Symbol
-
Assembly
GCA_947363905.1
Location
OX376215.1:8423533-8425869[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.018 11 6.6 2.7 18 43 9 31 5 32 0.93
2 20 0.048 28 5.3 1.8 17 44 36 60 31 60 0.80
3 20 0.0016 0.97 10.0 0.1 18 43 68 90 65 91 0.87
4 20 9.4e-05 0.056 13.9 1.0 17 44 98 122 95 122 0.91
5 20 0.00072 0.43 11.1 1.2 18 44 129 152 127 152 0.94
6 20 0.00012 0.072 13.6 1.5 15 43 157 182 154 183 0.89
7 20 0.0069 4.1 8.0 0.5 18 44 189 212 185 212 0.90
8 20 0.008 4.7 7.8 0.9 17 43 219 242 214 243 0.85
9 20 0.068 41 4.8 0.1 18 44 254 277 246 277 0.82
10 20 0.52 3.1e+02 2.0 0.4 14 43 298 324 281 325 0.75
11 20 4.8 2.9e+03 -1.1 0.3 18 31 332 345 329 349 0.80
12 20 0.29 1.8e+02 2.7 0.0 15 27 358 370 354 384 0.80
13 20 0.036 21 5.7 3.3 16 43 404 428 395 429 0.86
14 20 2.4 1.4e+03 -0.1 4.5 14 29 431 446 428 458 0.73
15 20 0.029 17 6.0 6.1 12 43 458 486 449 494 0.74
16 20 0.54 3.2e+02 1.9 2.8 18 44 493 516 487 516 0.84
17 20 0.82 4.9e+02 1.3 1.0 18 28 523 533 519 552 0.82
18 20 9.4 5.6e+03 -2.1 0.3 33 43 565 575 553 577 0.62
19 20 0.0001 0.06 13.8 1.9 5 43 604 641 603 642 0.85
20 20 5.9 3.5e+03 -1.4 0.1 12 27 686 701 679 703 0.76

Sequence Information

Coding Sequence
ATGTATCAAAATCAATTAGATTTTGTTTGCGACTACTGCTCAAGGACTTTTACAAGAAAATATAATTTACAAACTCATATAGAAAACTGTCATATTAACTCTTCGTGCCACTGTAATATCTGTGCCCAGAATTTTGGCAGCCCGGCTGGATTGATACAACATCTCTCCAGAGGCCATAACAATTATGGCCAGCCTTTCCCAGAATGTGAACTCTGTGGACGAATTTTTACAAGAAAACAGAACATAACATCACATATGATAACTGTACATCTACAGGGACTGGGGTTCGAGATTCGTTGTCGGTTGTGCGAAAAAACTTTCACTACAGAACGGAATTTGAAAAGGCATATCAATCAGTTGCATAATCCTGACGTTGAGTATCCTACGTGTAACGATTGTCACAAGGTTTTTAAAGGGAAACATTCGCTCATAGCTCATATTCAGTCTGTACATAATGTTAGCGAGAGGGACGCTATAAAATGCCATTTATGCGAAAAAGTATACACGAATAACCGGAACTTGAAGCGGCATATTGAAATGTTTCATGGCGTTAAAGGGGAGTTCAGATGCGACATCTGCCCCAAAGTATACACCTCGAATCAGAGCTTGAGAAGGCATGCCAGAACGCGGCACAACACTAATAGCCAGGAACACTTGACATGTAATTTCTGCATGAAAGTTATAATTGGGCGGGAAAATTTTGACAGCCATATACAATTCCATCACCAATACACTGAAATCGATGGTAGAAGCGAATTTGTGTGCGATTCGTGCGACAAAAGTTTCGAAGAAGAATTTTGTTTGCGGCAACATGTGAAAACAAATCATTCATTTAAGACCTTCTACAAGTATTGCAGGAGATCATTGCTCAAACAATACGGAATGGACACGCAAAACATATACAATTGTGAATATTGTGACAATTCTTTTTTGACTGTGTACGAGCTTAAGGATCATATGCGCGTAAACCATGACATTGAGTACTCGTTATCAACTTGCAACGTTTGTTATAATAAGTTTTTTAGTAAAGAAACCATCTCTGCGCATAGGAATGTGTGTCTACCGCCCCCAAACGTGAACACTTGCAGTCACTGCGACAAACTTTTCACTGATATTTCAAGCTTAGAATTTCATACGAGAATTTTTCACCCCCAAGCTCAAATCGCTGATTCTAACATTTCATCTACAAACATAGATGAAGACGGTGTTTCGTTCAAATGTGAGCATTGTGACCGCATCTACTACAGCGACAGGTCCCTCAAGCATCATATGAAGCTAAAACACACAACAGACGAAGAAGTAGAATGTGAATCGTGTGGAAAAATCTGTAGTAACAAGTATTATTTAGCTTCACATATAAAAATTGTTCATAACAACGACTCTTGGTCGAGATGCGAATACTGTGATAAACAATTTAAATCGAAAAGAAATATCAGAAGGCATATTGAATACACCCATTTGGGCATGCAACGACACAAATGTATTGAATGCGAGACCTTGTTTAAAGAAAAACGGAGTTTAAGAAAACATGTTCGGACGAAGCATCCTAACTCGGCAGCTTTTCCTCAGTGCCACATATGTCACAAACGATTCGAGTCGGCGAAATCTTGCAAAATACATCTTAAACTGTTGCATTCTTTCAACATGAACACTCACCCGTGTCACCTCTGTTCCGTGTCATTTAGCTCGAACGAGGCCCTAAATATACATCTAGAGACGAAACATTTAGCCGAAGATCAAATCTACAAATGTGAGGAATGCAACGTAGTTTTTAAAGGGCAGGAAAAGTTTGACGCTCACAACGACGTCTGCCACGTCAATTTAGTCCCTACGATCAAGCAGAAAGTACTGCCTAGATGCATTCTTTGCATGAAAGATTTTAGCACAAGGAAAACGTTAAAGCGTCATATAAAGAAATTCCACGAAGATTTTGATGTGGACGAATTGGCAACATTTGGCTCAAGGCGAAGAACATTTACAGTTGATTGTGAAGACTGTATAAAAAATTTCAATGATGATTTCTATTTGAGTGTGTTTAATAAGTTCAAGTATTTGAGAGACTCGGAAGTATTTAAGTGTGGGACTTGTTTTGAGTCCTACAACTCCTTGGAGTTCGCGATACAGAGGTATAAGGTGACAAACGCCGATGCTTGTAAAAGTAAAATGATTCTGAGCGAACTATGTACCACTGAGATGAGTGAAGAAGAGCATGACTTCTCAAACTTCGGAGCTTTGCACGATATGTTGCCGGAGAGTACTACCGGGGATTTACAAATTAAATTTGATGCTGTTGATGATTCGGAGACTGAAATCAAGACGGAACCAGTGTCACCTTAA
Protein Sequence
MYQNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCNICAQNFGSPAGLIQHLSRGHNNYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGFEIRCRLCEKTFTTERNLKRHINQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNVSERDAIKCHLCEKVYTNNRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTRHNTNSQEHLTCNFCMKVIIGRENFDSHIQFHHQYTEIDGRSEFVCDSCDKSFEEEFCLRQHVKTNHSFKTFYKYCRRSLLKQYGMDTQNIYNCEYCDNSFLTVYELKDHMRVNHDIEYSLSTCNVCYNKFFSKETISAHRNVCLPPPNVNTCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNIDEDGVSFKCEHCDRIYYSDRSLKHHMKLKHTTDEEVECESCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRHKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCHLCSVSFSSNEALNIHLETKHLAEDQIYKCEECNVVFKGQEKFDAHNDVCHVNLVPTIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEDFDVDELATFGSRRRTFTVDCEDCIKNFNDDFYLSVFNKFKYLRDSEVFKCGTCFESYNSLEFAIQRYKVTNADACKSKMILSELCTTEMSEEEHDFSNFGALHDMLPESTTGDLQIKFDAVDDSETEIKTEPVSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00447464;
90% Identity
iTF_00072251;
80% Identity
iTF_00908147;