Lsem021449.1
Basic Information
- Insect
- Lithophane semibrunnea
- Gene Symbol
- -
- Assembly
- GCA_947363905.1
- Location
- OX376208.1:5906720-5907502[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.6e-09 4.5e-06 26.7 0.0 2 36 19 53 18 61 0.89
Sequence Information
- Coding Sequence
- ATGCCGCGTATATACAAACCTGATCCTAGGGGGAAAACGTATAGAAAGTACGATGAAAACATTATAAATGAAGCTGTTGCCGCATATGCGAATGGCAAGTTCTCTTTAAAGGAAATAGCTGAGAAATATGGTATCGATAAATCTGTACTTTATAGACACAGTGTCAAAACTATGAAAAAACAAGGAGGGCAAACTATTTTAACAAACGAAACTGAAGAGTGCATGATAAAGTATATTAATATATGTGCGGAATGGGGATACCCTTTAGATGCATTGGATTTGAGGTATATTGTTAAGGCTTATCTTGACCAAGTGGGCCGGACAGTGCTAAAATTTAAAAATAATTTACCTGGACCCGATTTCGTCGCGGGTTTCCTAAAACGTCATAAAAACCAAATTTCCCAAAGATATAGTCAAAACATTAAGAAAAAAAGGGCAGAAGTTTCACCAAATACGATCAAAGAGTATTTCAAGGAGTTAGGAAAGTCATTGGCAGGCATAAATCCGAGCAATATAATAAACTACGATGAAACAAATTTGACCGACGACCCAGGACGCAAAAAAATCATAACTAAACGAGGATCGAAGTATCCAGAGAGGGTAATGAATAGTTCAAAGTCTTCAACTTCATTGATGATAGCCGCTACAGCCGACGGCGTTTTACTGCCACCGTATGTGGTGTACAAGGCTCTGAATTTGTATGACACATGGACTCAAAACGGACCACCAGGAGCAAGATATAATCGCACGCATTCCGGTTGGTTTGATGCAACTATATTTTGA
- Protein Sequence
- MPRIYKPDPRGKTYRKYDENIINEAVAAYANGKFSLKEIAEKYGIDKSVLYRHSVKTMKKQGGQTILTNETEECMIKYINICAEWGYPLDALDLRYIVKAYLDQVGRTVLKFKNNLPGPDFVAGFLKRHKNQISQRYSQNIKKKRAEVSPNTIKEYFKELGKSLAGINPSNIINYDETNLTDDPGRKKIITKRGSKYPERVMNSSKSSTSLMIAATADGVLLPPYVVYKALNLYDTWTQNGPPGARYNRTHSGWFDATIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406661; iTF_00907819; iTF_00695487; iTF_00042572;
- 90% Identity
- iTF_00907819;
- 80% Identity
- -