Lorn007109.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- ZFX
- Assembly
- GCA_948473465.1
- Location
- OX419640.1:6417214-6439844[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.25 18 6.3 0.4 1 23 323 346 323 346 0.91 2 11 0.012 0.86 10.5 0.1 1 23 353 375 353 375 0.98 3 11 1.5 1.1e+02 3.9 0.9 1 10 379 388 379 402 0.77 4 11 0.66 46 5.0 2.3 1 23 409 431 409 431 0.82 5 11 9.1e-06 0.00064 20.3 1.1 2 23 436 458 435 458 0.93 6 11 1.4e-05 0.00097 19.7 1.0 1 23 464 486 464 486 0.97 7 11 0.0052 0.37 11.6 1.5 2 21 498 517 498 522 0.93 8 11 3.1e-05 0.0022 18.6 2.0 1 23 530 553 530 553 0.94 9 11 0.0019 0.13 13.0 0.2 1 23 558 581 558 581 0.97 10 11 1.6e-06 0.00012 22.6 3.1 2 23 589 610 588 610 0.97 11 11 2.2e-06 0.00016 22.2 1.3 1 23 616 639 616 639 0.95
Sequence Information
- Coding Sequence
- ATGGATATCAAAGAAGAAGGTGTAGCTTATAAACTGCTCTGCAATGCCTGCCTTTGTGTCGGGCGAAAGCTCCACAACATTACAGATGAGAAAACACAAAAATACTACCTAAATGCTTTGGACGAAATTCCTCTACGCAGTTTGACAGCTGTAAACCTACAGGTCTGTTGGGAGTGCAAAGCTTTGCTAGAAAAGAGCATATCCTTTAAAGAACAAGTCCAGGACTCGTACAGGATACTGCAAACTTATACTCAAGAGAATCTCCACGAATGCCTCCTAACAGACGTAAGCAGACCACCTCGTCTGAAGGTCCACTGTGCTGAACCCACCAGTATATCTCCCTCAGATGGATACGAAACATTCTGCACTTACCCTGAAGTCCCCATTATTTGTATTAAGGATGAGCTTAAGGAGGATTGGGAATGCGACAACGATGACACAAACGCCTTAGATGACACTGGCCCTCTATCGGACAGCTCGGAAAACAGAGAACATTTCGAGTCGGAGCTGGAAAGTATAATGTGCTCTATGAACAGAGAGGAACAGAGAGAGAGTGAGAGTAAGGCTAAAGTAAAAAGAGCTAAGAAGATTAAGAGAGCCAAAGAAGATGAAAAAGTAACGGTGAAGACAGAAGCGTTCGTGGGCGGCAATCGTCCAAACAGAGCATCAGGCCTCGCGCGGCTGCCGCGCACAATTGCCGCGCTCAATGTACACACCTTAAGGAAACTGCGGCATCGTTGTCGTCAGTTTGCGTTTGCGCTTACATGTAGCGATGCCGAAGGTGCCGTGCCGCCAGTGGGTGCAGGCTCTAAGAAGCCAGGTGGACCTGGTGGACAACTTGGTCAGGTGGAGCCTAAACCTACGAAAGAGCGAGACCAAAAGATCCTAACCATAGAGCTGACATACGAAGAGATGCTGTTAGAAAGAGATAAAGAATCAACCAAAGAGTCGTACCTAAAGGCGGAGTATAAATGTGAGAGCTGTCTCATTGGGTTTAACTATAGGAAGTCATATTCAGCTCATGTGGCGGCCAAGCATTCAGCTGATCTAGGCGACTACATCTGTCCTATTTGCAAAACGATAATACCTTCAGTGGAATCATTTACAGCGCATTACAAGAGGCATATGAGAAGATATGAATGTAGTATTTGTCACAAAAGAACATTGGACGTAAAAGTGATGCAGCAGCATTACTACTCCACGCATGAGATATCACTGAAGGAATATAAATGTAATCTTTGTGGCAAAATATCTAATTCCATAGACACCCACCGCTACCATAAAGACACGCACAAAGCAAGAGTACAGTGCACAGAGTGTGACAAAACGTTCAGACATAGAGCGGGGCTCAAGAATCATAGACTTGCAGTGCATGAATATCGCAACACATTTCCGTGCACCATATGTGATAAAGTGTTCCGATGGAAGACTAGTCTCAAGCGACATTTAGAGAAACATGAAGTTAAGGGCAAGTCATCATCAGCAGAAGCGTACTGTTCCATGTGTAAAGTCAGCTTTTCGTCCATATTTTCTTACCAGAGACACATGAAGAACAGTCTCAAACATGTGTCACAGGATCAGCTCAAATTCATCTGTGATCATTGTAACAAGCGTTTCGCCGACAAGACAAAGTTAAGAGACCACATCGAAGAGAAACATTTACACAAGACTTACCAATGTCAAATTTGTCTGAAGCCTTCTAAAAATCGCGTCGGTTTGGACCAACATATCCGTAATGTGCACAAAGGAAGGCCGAACAATAAAATGTGTCATCACTGCGGTAAAGGATTTCCTACGAAAGTTCAGTTGGAGTCTCACATCCGTTCGCACACCGGTGAAAGACCTTTCATATGTGAATACTGCCCGACTACATTCTCACAGCAATCCAACTTATACAAACATAACAGACAGGTTCATCTCAACATAAAATCCAAACGCTATCCCATGTGTAAGAAGAAAGAAGATAAATTACCAGACGTGCCCATATTAGACCATGTTCAAGCCATTGACCCATATAGGCCGGTGCCCATGTTACACTACACCGCTGAAAAAGTGTTTGGTATGTAA
- Protein Sequence
- MDIKEEGVAYKLLCNACLCVGRKLHNITDEKTQKYYLNALDEIPLRSLTAVNLQVCWECKALLEKSISFKEQVQDSYRILQTYTQENLHECLLTDVSRPPRLKVHCAEPTSISPSDGYETFCTYPEVPIICIKDELKEDWECDNDDTNALDDTGPLSDSSENREHFESELESIMCSMNREEQRESESKAKVKRAKKIKRAKEDEKVTVKTEAFVGGNRPNRASGLARLPRTIAALNVHTLRKLRHRCRQFAFALTCSDAEGAVPPVGAGSKKPGGPGGQLGQVEPKPTKERDQKILTIELTYEEMLLERDKESTKESYLKAEYKCESCLIGFNYRKSYSAHVAAKHSADLGDYICPICKTIIPSVESFTAHYKRHMRRYECSICHKRTLDVKVMQQHYYSTHEISLKEYKCNLCGKISNSIDTHRYHKDTHKARVQCTECDKTFRHRAGLKNHRLAVHEYRNTFPCTICDKVFRWKTSLKRHLEKHEVKGKSSSAEAYCSMCKVSFSSIFSYQRHMKNSLKHVSQDQLKFICDHCNKRFADKTKLRDHIEEKHLHKTYQCQICLKPSKNRVGLDQHIRNVHKGRPNNKMCHHCGKGFPTKVQLESHIRSHTGERPFICEYCPTTFSQQSNLYKHNRQVHLNIKSKRYPMCKKKEDKLPDVPILDHVQAIDPYRPVPMLHYTAEKVFGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00908196;
- 90% Identity
- -
- 80% Identity
- -