Lorn015435.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- -
- Assembly
- GCA_948473465.1
- Location
- OX419643.1:9951682-9953739[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.1e-05 0.0036 18.0 0.1 2 23 185 206 184 206 0.97 2 11 7.3e-05 0.0051 17.5 0.6 1 23 213 235 213 235 0.98 3 11 0.63 44 5.1 2.4 1 22 240 261 240 262 0.86 4 11 0.00037 0.026 15.2 3.1 1 23 268 289 268 289 0.99 5 11 0.0085 0.6 11.0 0.2 2 23 295 316 294 316 0.96 6 11 0.00063 0.044 14.5 3.1 3 23 323 343 319 343 0.95 7 11 0.00042 0.03 15.1 0.9 2 23 350 371 349 371 0.97 8 11 4.6e-05 0.0032 18.1 1.7 1 23 377 399 377 399 0.98 9 11 4.3e-05 0.003 18.2 1.3 1 23 405 427 405 427 0.98 10 11 0.0019 0.13 13.0 0.1 1 23 433 456 433 456 0.96 11 11 0.011 0.8 10.6 3.1 2 19 463 480 462 486 0.92
Sequence Information
- Coding Sequence
- ATGGCGAGTAGAATACAATTTGAAGATGAAATTTTTGACCAAAATATAAATAAAACTAACGGACCCGAATATGGAGAAATAACATTAAAGGAAGAAGATCCATCAGATGAGGGTATCTGCAGTCTAGAACCTATTCAAGGAAAAGAAATCCAAAATTTTACAGAAACTGATTCTGAGACAGTTAATACCACTGAACCTAGTAGCAGAGATACTAATACAGTAAAAAATGTAATCATCCTTGGCAGTCGGGTAAAAAAAAGTTCTGAAGTTCCAATTGAGCAACAGGGTAACATTGCATTGCAAAGTGAGGGTAATGTTACCATAGTTGGAGGGGGTAAGGGTAAGAGGAAGAATAAAACTGAGCTTGAGATGCTTGGTATAGACATAAAGGAGAATTATGAAGATTTAGATGCTGAATATGATGTGTTTGGAGATGAAAGTAAAGTATTTAGAAAGTATAAATTGAGGAAAACTGAGCAACCTATCTCATATAAGGAGCCAGCGGACATTAAACCCAAACGCCGCATCAGTACAGATGACGAAACGGACTTGACCTGCCCCGTTTGCCAGCAAGAGTTTGAAAACAAGATGGCATTACTGAATCACCTCCGAATCCACAATAAAACTGTACATGAATACACCTGCTCACTATGTACAAAGAAATTCGGGAAAAACGCAGACTTAATTGCCCACAGAGAGAAGCATAACGGAGAGTCTTTTCTCTGCCAGGAATGCAAACTAGCATTTTCAAACTACTGTGATTATTTACTACACAACTACGAGCATTTGAGCCAACCACATTTCAAATGCACAGAATGCGGACTGCGCTATCGAAAATCATTCTACAAACAACACATTATGACACATTTTGAAAAGCTACTGTCCTGCGACTTATGCTCTTTCGTTACGAACGGCGAATACAATCTACGGGCTCATATAAATCAGCATAAATACTGTAAATCTGCTTGTGTTGAGTGTGGAAAAGTGTGCAAGAGCAAAAAAGATTATGAATATCATATGAGCATACATACTGGGGTTAAGAGGATCCAGTGTCTTTACTGCGGAGCATGTTTTCGCAACCAGAGCGCGAGGGATGTGCACACTAGAATACACACAGGTGAAAAACCTTTCACGTGCGACATTTGTGGGCACAAAGCGCGGCAGTGGACAGATTTGAAACGACATAAAGAGACTCATGTCACTGAGAAAAAGTACGCTTGTAATGTGTGTGGGAAAAAATATTTGCACAAAGATTATCTTGTGATTCATATGCGGTCTCATACAAAGAAGTATTTGTATGAGTGTCCAGAGTGTGATGCTAAGTTTGTTGGTGTGGCTGGGTTGAGGACTCATACGATGTACAAACATACAAGCGAGCGGCCTGTTGAGTGTACGCTTTGTGATAAAAAGTTTATTAATTATAATCAATATCGGAAACATTGTAGGGCGAAGTATCATTTGAGAAATGTGTATGGGAATAATATTGATAAAAAGAAAGATGAATGA
- Protein Sequence
- MASRIQFEDEIFDQNINKTNGPEYGEITLKEEDPSDEGICSLEPIQGKEIQNFTETDSETVNTTEPSSRDTNTVKNVIILGSRVKKSSEVPIEQQGNIALQSEGNVTIVGGGKGKRKNKTELEMLGIDIKENYEDLDAEYDVFGDESKVFRKYKLRKTEQPISYKEPADIKPKRRISTDDETDLTCPVCQQEFENKMALLNHLRIHNKTVHEYTCSLCTKKFGKNADLIAHREKHNGESFLCQECKLAFSNYCDYLLHNYEHLSQPHFKCTECGLRYRKSFYKQHIMTHFEKLLSCDLCSFVTNGEYNLRAHINQHKYCKSACVECGKVCKSKKDYEYHMSIHTGVKRIQCLYCGACFRNQSARDVHTRIHTGEKPFTCDICGHKARQWTDLKRHKETHVTEKKYACNVCGKKYLHKDYLVIHMRSHTKKYLYECPECDAKFVGVAGLRTHTMYKHTSERPVECTLCDKKFINYNQYRKHCRAKYHLRNVYGNNIDKKKDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00623438;
- 90% Identity
- -
- 80% Identity
- -