Lorn013197.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- -
- Assembly
- GCA_948473465.1
- Location
- OX419629.1:14554632-14562343[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00043 0.03 15.0 1.1 1 23 271 293 271 293 0.98 2 12 0.0014 0.097 13.4 1.3 2 23 301 322 300 322 0.94 3 12 0.69 48 5.0 0.3 1 23 326 348 326 348 0.94 4 12 0.00048 0.034 14.9 1.0 1 23 353 376 353 376 0.98 5 12 0.0011 0.075 13.8 0.2 1 23 380 403 380 403 0.94 6 12 0.0051 0.36 11.7 0.3 2 20 415 433 415 439 0.93 7 12 0.0008 0.056 14.2 1.8 3 23 449 470 449 470 0.98 8 12 0.17 12 6.9 0.7 2 23 490 512 490 512 0.97 9 12 6.2e-05 0.0043 17.7 0.9 1 23 523 545 523 545 0.97 10 12 2e-06 0.00014 22.4 2.0 1 23 551 573 551 573 0.99 11 12 1.7e-05 0.0012 19.4 0.6 1 23 579 601 579 601 0.98 12 12 9.7e-06 0.00068 20.2 0.4 1 23 607 630 607 630 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTCATGAAAGTGTGTCGTATTTGTTCAATAACGGACGTGAAATTACACGACCTGCGATCATACCCATTAGAATCTTATTATGAGTCTGTAATAGGAACCAATGCCCAGTACACCAACTTGCCACCATTTGCCTGCTATGAGTGTGCAGCACTTGTGAGGAAATTTTATTTCTTCAGACAAAAATGTCTACGGAGCCAGGCAGCACTCCATGGCGCTACAGATGCCTTTGGCAAGGTAAAACCTAAAGATGTAAAATTAATAGACAGAAACGGTCTCCACATTGCCTCTAACCTCAAAATAACCATCTTGCCGAACATAGAGATATTGAAGACCCAAAAACCTCAAATAAACAAAGAAATAAAACTTGAACCAGGCAGTGAGGATGACGACGATAAGTTTAAAATTGAAGATCATAACTATGCTTCGTTTAACTCAATTGATCCCTGTATCTCCAGCGATGATGATGAACCTCTATCGCTTCATAAGGAGAAGAAAAGTCAAAATAAGGATACAGATGATGAGAAGGTGGACTTGAAAGAGGAGTTTGAAGGTCTCGAATTTGCTGTGGGCACAGAAGACTCTGGACATTCAATTGAAGTACCTAAAGTGGTTGCAAGGAAAAAGAAACGTGGGCTGAAAAAAGACACTTTTAAGCATAAAAAAGAGTTGTTAAACCCAAGCTTGGCTGGTGATGGCAAATGGAATGATTTTGCACAATACATCAATGTTATTACTTTGACGTTGGAAGAGCAGAAAGAAGAGATACAGAAACGGAAGGAGTCAACCAACTACTTGAACTCTCCGTTCCAGTGTAATCTGTGCTATAAAGGGTTCATTGACAATGATGCCTGGAACCATCATGTTAGCAAGCATGCTGTGAGCGCAGGTAGCATAGAGTGTGAAGTCTGTAAGTTTAGGTTTAAAACAAAGCGCGCCTATCAGAAACATGCATCCAACCATGAGAAGAAATACGCCTGTAAATCCTGTCCATACATATCTACTAACACGACACAAGCTAAGCAGCATCAAGGATGGCATAAAGGAATTACTTTCAAGTGCAAATTTTGCGATGAAATCTTTACAATATGGACTTCTTACATGAGTCACGTGCGTATCAAACACCCGTCTGAGTTCATATGCGGCTACTGCGGGTACTCATTTATCAGCAAGTTGGGCCTCGCCATGCACAAGACTATGATGCACAAGGATGTCCAAGAGAAAGCAGAAGAAGGTCCGTACTGCGAGGAGTGTGACGTCAAGTTCATATCGACAGAGGCGTACAAGAGACACATGGTGATGTCCACCAAGCACACGCAGAGCACAGACTCTATTAAAGGCTGTAGGACTTGTGGCGCGACGTTCGAGAACTCCGAAGAGCTACGACTACATCATCGTAAGGAACACACGCGGAAGCGACCCAAGAACTACGGGAAGAAACGTTCTAACCTCAGTTGGCCTGCCAAATGTGAACATTGTACGGAAGAGATCCCGAACGCTCGCGAATACTGGACACATTTCCGTCGAGCTCATCCCGACAAGAAGTACCCCATACAGAAGAATCACATATGTGATATATGTGGCAAGGGATTCAGGGGTAACGCCTTCCTAATATACCACAAACGCACGCACTTCGAAGAGCGAGCGTACAAATGTTCGCAGTGCGACAAAGCGTTCTTCAACCGAACCAACTTAAATGTTCATGAGAAAACGCACTCAGACAACAGGCCATATCCTTGCTCTGTTTGCTTCAAAGCTTTCAAGGGTAAAGGAGCCCTCAACAGGCATTTTAGAAGCCACACGGGTCAAAAGCCCTACGAGTGTGAAGTATGCGGCAAAGGATTCTCTCAGTCAAATAGCAGGAAACTTCACGTTCGCACAGTACATCTGAAGCAACCCGCGCCTTACGTCAGTCGCAACCGTCTTGAGAGACGGAAGCAAGGGCCTAAGGAACCGGTGCCACAACAATTTATATACTGA
- Protein Sequence
- MEVMKVCRICSITDVKLHDLRSYPLESYYESVIGTNAQYTNLPPFACYECAALVRKFYFFRQKCLRSQAALHGATDAFGKVKPKDVKLIDRNGLHIASNLKITILPNIEILKTQKPQINKEIKLEPGSEDDDDKFKIEDHNYASFNSIDPCISSDDDEPLSLHKEKKSQNKDTDDEKVDLKEEFEGLEFAVGTEDSGHSIEVPKVVARKKKRGLKKDTFKHKKELLNPSLAGDGKWNDFAQYINVITLTLEEQKEEIQKRKESTNYLNSPFQCNLCYKGFIDNDAWNHHVSKHAVSAGSIECEVCKFRFKTKRAYQKHASNHEKKYACKSCPYISTNTTQAKQHQGWHKGITFKCKFCDEIFTIWTSYMSHVRIKHPSEFICGYCGYSFISKLGLAMHKTMMHKDVQEKAEEGPYCEECDVKFISTEAYKRHMVMSTKHTQSTDSIKGCRTCGATFENSEELRLHHRKEHTRKRPKNYGKKRSNLSWPAKCEHCTEEIPNAREYWTHFRRAHPDKKYPIQKNHICDICGKGFRGNAFLIYHKRTHFEERAYKCSQCDKAFFNRTNLNVHEKTHSDNRPYPCSVCFKAFKGKGALNRHFRSHTGQKPYECEVCGKGFSQSNSRKLHVRTVHLKQPAPYVSRNRLERRKQGPKEPVPQQFIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121701;
- 90% Identity
- iTF_01441315;
- 80% Identity
- -