Lorn005772.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- -
- Assembly
- GCA_948473465.1
- Location
- OX419632.1:6205447-6216704[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.22 15 6.5 0.9 6 20 12 26 6 28 0.86 2 14 0.071 5 8.1 0.5 2 20 34 52 33 54 0.93 3 14 0.68 48 5.0 0.5 1 12 209 220 209 229 0.83 4 14 0.46 32 5.5 0.1 1 19 365 383 365 383 0.98 5 14 0.00021 0.015 16.0 0.4 1 23 390 412 390 412 0.98 6 14 7.8e-06 0.00055 20.5 0.6 1 23 426 448 426 448 0.99 7 14 0.91 64 4.6 0.7 1 10 473 482 473 494 0.73 8 14 0.00026 0.019 15.7 0.3 3 23 502 522 500 522 0.96 9 14 0.00076 0.053 14.3 2.3 1 23 538 560 538 560 0.98 10 14 1e-06 7.2e-05 23.3 4.7 1 23 566 588 566 588 0.98 11 14 0.00051 0.036 14.8 5.2 1 23 594 616 594 616 0.97 12 14 8.8e-06 0.00062 20.4 0.4 1 23 622 644 622 644 0.98 13 14 0.00042 0.03 15.1 1.1 1 23 648 670 648 670 0.98 14 14 0.00019 0.013 16.2 0.1 1 23 678 701 678 701 0.96
Sequence Information
- Coding Sequence
- ATGGGAGGCCAGCTGTTGAATTGCCCCCTTTGTTGCAATACGACTTTTAGTTCTAAACAATCTCTACTTGAGCACTTAACTAATGCTTTAGAGAATCTATATTGTCCTGTTTGTAACTACAAATGTCCCTCCTTACCACACCTTGTAGAACATTTGTCTCAGGATAATTGTCAGCCAAGTAATAATGTACATACCATTATATTTGAGCGCCAATCAGATGAGAACTCATCAGTTGTTGGAAATTCTGAAATTAAGGTTTATCCGAGTGAAATAAATACTAATGATGGGAGTCACTATACACCTGAACAAACTTACGAAACTCAGGTGGCCCTGAATGATGCCAACAAAATGTATGTGGAATTGTTTAGCAAGCAGTTGAAACCATGCCTTCAAACACGGGAATTTAAACTGGTGAAGGAAAATGGGGAGAGCCGGTACATGATTGTCACTCAGGATGATACCGATTTGAATGCAGGAAGCACTATTGTTACAAAACAAAATATTGATGGAACTATATCACTGACTACTGTTAAAGATATGAACCTGGGCTCCGAGAATTTAATAACACCAGACAATATACAAGAGAATCAAGAGGATAATCAAGAAGATTGTCAGGAGGAGATCTACAGCTGTAACACTTGCAAAGTGTCATTCTCATCTGTTATAGAGCACATACAGAACTACCATAATGATCAGGAAGTTGTTGTCGAGGAGCCAATGGAAGAGGGTCATACTGAGTCAGTGCCTGAATACGAGCCAATGGAGAATGAAGACACATTGGTGACCACAGACAAGCAGACCCCACGGCGCGTCATCACTGACACGGGCGATATTGTGGAGGAGCCACTCATGTTTAAATCTGGTGATCAAATGATTTCATCGGATCCATTGAGCTTGAATCAACCGCAAGAACCGATTAAAGTGGAGGAAAAAGGACTGCGCGTCGTCTCGAAACGTTTCCTGCAAGTTGACAAACTCTGTGACAGTGTCATCAAAGATGCCATCCAGGCTGACGCAAAAGATAAAAGCGGTCCGTATCACAAGGTAATCGTCAAAGAAGTGCCAACGGACAACGGGTTCGCCATCAAAATGTACCAATGCTTAGCATGTGACATATCTGTCACTAATTTGGATGAGTTCAAAGTACATCCATGCAAAGTATTAAAATACCCGTGTCTATATTGTCCTGTGGCGTATGAAAACTCGAAATCTCTGTGTGCACATATGAAAGCACACAAAGTGAAAACAGAGTCTATCGTCACTGGGCCAGTATCATACGAATGTGCGATATGCAACACGGTCTTCCCAACTAACAAGTCTTTGAAACTACACAAACGGATGCACGATCCAGTCAAATCACGTCCCATAGAGCCTCCGGTAGAAAACACAGACGGTTCAGAAGTGAGCGAAGGCAGATACCGATGTACTTACTGCAATAAAATGATCCCGATTGACTACAAGACTATTCACCAGAACTCCCACAAAAGCTCTGAGAAAATGAACTGCGGAATTTGTAATAAGAAATTCACATCTATAGAGTATCTAGAAATGCATACGAATGTACATAATGTGGATAAGGCGCCCATGAACAATCAAGATAAGAACCTACCATACAGTTGTTTGTATTGCAACAGAAGATTTGCGCGGCCGCACGAAAAGGTGAAACATGAAAGGATACATACAGGCGAGAAGCCCCACACGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACCGGCGCGCGGCCGTACGCCTGCCCGCACTGCGGCAAGAGGTTCAAAGCACACAGCGTGTACAACCACCATCTGCTGACGCACTCGGAGGTGCGCGCCTACAAGTGCCCGTTCTGCCCCAAAGCGTTCAAGACGTCCGTGCAACTCGCCGGACACAAGAACTCGCATACCAAGCCGTTTTCTTGCCAACATTGTAATAGGCCATTCGCATCCTTATACGCGGTTCGGGTCCACACAGAAACACATGCGCGTCAGAACAACCTGAAATTCTCGTGCGAACTATGTGGCGCCAGCTACGCGAGAGCCTTCGCTCTTAAGGACCATATCAAGCAAGCACACAATGAACACAAACAAGAGCAATCGGTGAGTCTTATCATCATTATTCATCATCATCAGTATGAAACAACTCCAAGTTGTTGTGTGGACTATGCAGCGCCACATCTATGCAGCATACACATCGCTCTTAAATACCACATCAATCAAGCGCACAGTGAGCAGGAACTAGCGCAGTCACCATCACGGACGATTCCTGGCGATGAAGACTGGTTGACAAAAGACAACCAGGATACGGATGGAATACCGGTACTCAACAAAGATTTGACACATGAGATAGACCTGGGAATGACGGCCGGCGAACTAATAGTTCCTTAA
- Protein Sequence
- MGGQLLNCPLCCNTTFSSKQSLLEHLTNALENLYCPVCNYKCPSLPHLVEHLSQDNCQPSNNVHTIIFERQSDENSSVVGNSEIKVYPSEINTNDGSHYTPEQTYETQVALNDANKMYVELFSKQLKPCLQTREFKLVKENGESRYMIVTQDDTDLNAGSTIVTKQNIDGTISLTTVKDMNLGSENLITPDNIQENQEDNQEDCQEEIYSCNTCKVSFSSVIEHIQNYHNDQEVVVEEPMEEGHTESVPEYEPMENEDTLVTTDKQTPRRVITDTGDIVEEPLMFKSGDQMISSDPLSLNQPQEPIKVEEKGLRVVSKRFLQVDKLCDSVIKDAIQADAKDKSGPYHKVIVKEVPTDNGFAIKMYQCLACDISVTNLDEFKVHPCKVLKYPCLYCPVAYENSKSLCAHMKAHKVKTESIVTGPVSYECAICNTVFPTNKSLKLHKRMHDPVKSRPIEPPVENTDGSEVSEGRYRCTYCNKMIPIDYKTIHQNSHKSSEKMNCGICNKKFTSIEYLEMHTNVHNVDKAPMNNQDKNLPYSCLYCNRRFARPHEKVKHERIHTGEKPHTCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHNEHKQEQSVSLIIIIHHHQYETTPSCCVDYAAPHLCSIHIALKYHINQAHSEQELAQSPSRTIPGDEDWLTKDNQDTDGIPVLNKDLTHEIDLGMTAGELIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00173446;
- 90% Identity
- iTF_00906402;
- 80% Identity
- -