Lorn006288.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- -
- Assembly
- GCA_948473465.1
- Location
- OX419640.1:2308950-2344729[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00068 0.048 14.4 2.8 1 23 548 570 548 570 0.99 2 17 0.093 6.5 7.7 1.1 1 23 588 611 588 611 0.91 3 17 0.01 0.71 10.7 0.4 2 23 618 639 617 639 0.95 4 17 0.00029 0.02 15.6 0.1 2 19 647 664 647 666 0.95 5 17 0.00022 0.015 16.0 7.8 1 23 682 704 682 704 0.95 6 17 0.00022 0.015 16.0 7.8 1 23 726 748 726 748 0.95 7 17 0.00034 0.024 15.4 10.0 1 23 770 792 770 792 0.95 8 17 0.0017 0.12 13.2 6.5 1 23 814 836 814 836 0.95 9 17 0.00022 0.015 16.0 7.8 1 23 858 880 858 880 0.95 10 17 0.0017 0.12 13.2 6.5 1 23 902 924 902 924 0.95 11 17 0.00022 0.015 16.0 7.8 1 23 946 968 946 968 0.95 12 17 0.00029 0.021 15.6 7.4 1 23 990 1012 990 1012 0.95 13 17 0.0017 0.12 13.2 6.5 1 23 1034 1056 1034 1056 0.95 14 17 0.00022 0.015 16.0 7.8 1 23 1078 1100 1078 1100 0.95 15 17 0.0017 0.12 13.2 6.5 1 23 1122 1144 1122 1144 0.95 16 17 0.0047 0.33 11.8 0.3 1 18 1166 1183 1166 1183 0.92 17 17 0.54 38 5.3 0.1 9 23 1194 1208 1193 1208 0.95
Sequence Information
- Coding Sequence
- ATGGCGCTGTGTGAAAGTCAGCTGGACTCCGCTTTGCCGCAGCTCAAACGAGAGGAGTCCTCGAGCAGCGAGGGCAGTCAGAAACAGACGCCAGAGAAGAAGACTAAGATTGAGCATAATGGAGAGATCTATGGGCTGAACCAAGTGCCTGGCGGTCTGCCGCTAACAGTGGACTATCGCTCGCCCGTGTCACACTTCGTGCCGCCGGAGTTGTACGCGGCGAGGCAGAAGCAAGCGCCAATCACTACTGCTGAAACCAGCGAACCGCCGACTCCTGTGAAGAGGAAGCGTGGCAGGCCCAGAGTGGACAAGACGAGTCCTGAGTATTTGGCCAACTTAGCGGCCAGGAAACAAGCCAAGGAGATGGCCGCTATGATGAATAACAGGACCCCAGAAAGTGGGGAAAAGCGTAAGCGGGGAAGGCCACGCGTGGACAAAACAAGCCCAGAGTATTTGGCTAGGAAGAGGGCCCGGGAGTTAGAAGCTCTGGAGAGAAAGGCTAAAAGAGAGTATAAACGTCGCGCTACGGGAGCAAAGCCCATCTCAAAAACTGCATTACAAATGTCTTCGCGCGTCAAAAAACGACAGTTGCCAGCAAACAATAAAAAAATGGGTGTTGCTATGAGGAAATTACCGCAGAAAATTGGCAATACCGTCAGAAAGGCTGGCAACACCGTCAGAAAGGTTGGCGATAGGAAGGTTTTAGTGAGACGGACTGAAAGCCGAAAGTTTATTAAGAGAAAAGATTCTGCAGCCTCATCTTCTGCTGGGGAGACAACTCCGAGGACTAAGAGAAAATATACTAAAAGAACTCCGAGCGCTAAGAAAGATGCTCCCCCCTCGACGGAGCGCGTGAAGGGCAAGCGAGGTAGACCGCGGAAGGTGGACCAACTTGCAGCTAGCAACAAGCAACAACAGCAACCGAAGATTCGCGTAAGAAATAATTTGATGCCCGTCAACTCTGAACCGATCACATTGGACAGCGATGATGAACCGGATCTGGGTTCACCAAGTCAAGCATCAGACTCGCTGAGTTTGGACGAGAATCTGCGAGCGTTGAGACATATTCACGAGAAATACGCTAATATTGACAAGGACGATCTGTACGACACACACTTGCTGGCCGCCAACTTTAAGAAGCCGCACGACTCGCAGCGCAGAGGTGATGAGGACGAGGTCTTGTCTGTTAGGAGTTCTGAAGGATGTGCTTCGGTTAAAGAAATGGAGACGAGGGTGGAGAAGTTGGAAGATAGTTCCAATTCTGATTCCGACAGCAGTAGTTCTGGATCTGAGCTACATGCGGTCCCCTCTCAAAGCACATCCGGAACCCGAAACACCCGTAGCAGCAGTTCAAGTTCCGGATCCAGTACATCATCGAGCTCTGACTCCTCAAGTTCATCAGACAGTTCCGACACTGAGTCAGAATCTGGCGACGAGAAACAGAAACCCAAGACTGAAGATCCACCACCGGTGGCCAATCATACGACTAATGAGGATGATAGGTCGTTCGGCGCTTGGTCGTACAGTGGGCCGGCTTCCGACAGCGGATCCGACTCGGATCCGGAACGGGCCGCGGATCCGGCAGCTCCGGCCTCACATGATGAGATCAGCGAGTCCGAGAATGAGTCCGCTGACAAGAGCTTCCAATGTCATATCTGTTCCAAGTGGTATTCTACGAGAGTCACGTTGAAAATCCACCGCCGCGTCCATCAGAACCGCGGCGGCGGCAACTCGCGGTCGCGCGCGCGCTCGTCCGACAGGTACGAGTGCGACTGTTGCAGTGAAACATTCAATAGACGGGAGAAATTATGGGAACACAAAGCGGAAGCTCACCGCGGCGCCATGACAGTTCGATGTGAAGTGTGCCGCAAGTGCTTCGAAGACGACGCGGAGTTAGCTGCGCATGATCGTACACACACTGCGGACGAACGAGCTGGGCGGTGCCCCACGTGCGGCCTGACGTTCCCGCGCTACGAGCAGCTGCGGCGCCACGCCGCCTGCGCGCACGGCGCCGCGCCGCCGCCCGGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCATTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGGGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGGGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCATGAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGGGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGGGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTAAGGTGAGTGCTACACGCTCCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCATGCGCACTCCCTCACGAGGCGCGCACGCCGGAAGGCTAGGATGATTGCATCATTCGCACGAGCAGATCAGCTGGCGCAGCATCTGAACAGCCACCTCGCGAACTACAAGCGCCTGAAGCCGTGA
- Protein Sequence
- MALCESQLDSALPQLKREESSSSEGSQKQTPEKKTKIEHNGEIYGLNQVPGGLPLTVDYRSPVSHFVPPELYAARQKQAPITTAETSEPPTPVKRKRGRPRVDKTSPEYLANLAARKQAKEMAAMMNNRTPESGEKRKRGRPRVDKTSPEYLARKRARELEALERKAKREYKRRATGAKPISKTALQMSSRVKKRQLPANNKKMGVAMRKLPQKIGNTVRKAGNTVRKVGDRKVLVRRTESRKFIKRKDSAASSSAGETTPRTKRKYTKRTPSAKKDAPPSTERVKGKRGRPRKVDQLAASNKQQQQPKIRVRNNLMPVNSEPITLDSDDEPDLGSPSQASDSLSLDENLRALRHIHEKYANIDKDDLYDTHLLAANFKKPHDSQRRGDEDEVLSVRSSEGCASVKEMETRVEKLEDSSNSDSDSSSSGSELHAVPSQSTSGTRNTRSSSSSSGSSTSSSSDSSSSSDSSDTESESGDEKQKPKTEDPPPVANHTTNEDDRSFGAWSYSGPASDSGSDSDPERAADPAAPASHDEISESENESADKSFQCHICSKWYSTRVTLKIHRRVHQNRGGGNSRSRARSSDRYECDCCSETFNRREKLWEHKAEAHRGAMTVRCEVCRKCFEDDAELAAHDRTHTADERAGRCPTCGLTFPRYEQLRRHAACAHGAAPPPGSARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSATRSARLPHACAHCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLTGHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLTGHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLMRHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLTGHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLTGHMHNHAKQLYRCVVCKVSATRSARLPHACAQCGKRFSHAHSLTRRARRKARMIASFARADQLAQHLNSHLANYKRLKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -