Lorn007671.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- -
- Assembly
- GCA_948473465.1
- Location
- OX419640.1:9117986-9120322[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0069 8.5 6.8 2.5 18 43 9 31 5 32 0.93 2 19 0.01 12 6.2 1.0 17 44 36 60 31 60 0.84 3 19 0.0007 0.85 10.0 0.1 18 43 68 90 65 91 0.87 4 19 4.8e-05 0.058 13.7 1.5 17 44 98 122 95 122 0.91 5 19 0.00031 0.37 11.1 1.2 18 44 129 152 127 152 0.94 6 19 5.2e-05 0.063 13.6 1.5 15 43 157 182 154 183 0.89 7 19 0.003 3.6 8.0 0.5 18 44 189 212 185 212 0.90 8 19 0.0034 4.2 7.8 0.9 17 43 219 242 214 243 0.85 9 19 0.047 57 4.1 0.1 18 44 254 277 246 277 0.84 10 19 0.22 2.7e+02 2.0 0.4 14 43 298 324 281 325 0.75 11 19 0.13 1.5e+02 2.7 0.0 15 27 358 370 354 384 0.80 12 19 0.027 33 4.9 3.9 16 43 404 428 396 429 0.86 13 19 0.0025 3 8.2 3.2 13 43 459 486 451 487 0.78 14 19 0.047 58 4.1 0.8 17 44 492 516 488 516 0.85 15 19 0.35 4.3e+02 1.3 0.8 18 28 523 533 519 546 0.82 16 19 3.9 4.7e+03 -2.0 0.3 21 43 556 575 552 577 0.63 17 19 5.1 6.2e+03 -2.4 0.4 13 28 578 593 571 596 0.79 18 19 2.3e-05 0.028 14.7 1.9 5 43 604 641 603 642 0.85 19 19 3 3.7e+03 -1.7 0.1 12 27 686 701 678 702 0.77
Sequence Information
- Coding Sequence
- ATGTATCAAAATCAATTAGATTTTGTTTGCGACTACTGCTCAAGGACTTTTACAAGAAAATATAATTTACAAACTCATATAGAGAACTGTCATATAAACTCTTCATGCCACTGTAATGTCTGTGGCCAGAATTTCGGCAGCCCGGCTGGATTGATACAACATCTCTCAAGAGGCCATAACAACTATGGCCAGCCATTTCCAGAATGTGAATTGTGCGGACGAATTTTTACAAGAAAACAGAACATAACATCTCATATGATAACTGTACATCTACAGGGACTTGGGTACGAGATTCGGTGTCGGTTGTGCGAAAAAACGTTCACTACAGAACGGAATTTGAAAAGGCATATCAATCAGTTGCATAATCCTGACGTTGAGTATCCTACGTGTAACGATTGTCACAAGGTTTTTAAAGGGAAACATTCGCTCATAGCCCATATTCAGTCAGTACATAATGTGAGCGAGAGGGATGCTATCAAATGCCATTTATGCGAAAAAGTATACACGAATAACAGGAATTTGAAGCGGCACATTGAAATGTTTCATGGAGTAAAAGGGGAGTTCCGATGTGACATCTGCCCAAAAGTCTACACCTCGAACCAAAGCTTGAGAAGGCATGCCAGAACACGGCACAACACTAACAGCCAGGAACACTTGACATGCAACTTCTGCATGAAGGTTATAATTGGGCGGGAAAATTTTGACAGCCACATACAGTTCCACCACCAAGACACCGAAATGGATGGCAGAAACGAATTTGTGTGCGATTCGTGCGACAAAAGTTTCGAAGAAGAATATTGTCTGCGGCAACACGTGAAAACAGAACATTCTTTTAAAACCTTCTACAAATATTGCAGGAGATCTTTGCTAAAACAATACGGGATGGACACGCAAAACATATACAATTGTGAATATTGTGACAATTCTTTTTTAACTGTTTACGAGCTTAAAGATCATATGCGTGTAAACCACGACACTGAGTACTCCCTATCAACTTGCAATGTTTGTTATAATAAGTTTTTTTGTAAAGAAACCATGGCTGCGCATAGAAATGTGTGTCTACCGCCTCCAAACGTGAACACTTGCAGTCACTGTGACAAACTCTTCACTGATATTTCAAGCTTAGAATTTCATACGAGAATTTTTCACCCCCAAGCTCAAATCGCTGATTCTAACATATCATCTACAAACATTGATGAAGATGGTATTTCGTTCAAATGTGAGCATTGCGACCGCATCTATTACAGCGACAGATCGCTCAAGCATCACATGAAGCTAAAACACACGACAGACGAGGAAGTAGAATGTGAATCGTGTGGAAAAATCTGCAGTAACAAGTATTATTTAGCTTCACATATAAAAATTGTCCATAACAACGACTCTTGGTCGAGATGCGAATACTGTGATAAACAATTTAAATCCAAAAGAAATATCAGGAGACATATTGAATACACTCATTTGGGCATGCAACGATACAAATGTATTGAATGCGAGACCTTGTTTAAAGAAAAACGGAGTTTAAGAAAACATGTTCGGACAAAGCATCCTAATTCAGCGGCTTTTCCCCAGTGCCACATATGTCACAAACGATTCGAGTCTGCGAAGTCTTGTAAAATACATCTTAAACTGTTGCATTCTTTCAACATGAACACTTACCCGTGTCACCTCTGTTCCGTATCGTTTAGCTCAAACGAGGCGCTAAATATACATCTAGAGACGAAACATTTAGCCGAAGATCAAATCTACAAATGTGAGGAATGCAACGTAGTGTTTAAAGGGCAGGAAAAGTTTGACGCTCACAATGAAGTCTGCCACGTGAATTTAGTCCCTACGATCAAGCAGAAAGTACTGCCTAGATGCATTTTTTGCATGAAAGATTTTAGCACAAGGAAAACGTTAAAGCGACACATAAAGAAATTCCACGAAGATTTTGATGTGGACGAATTGGCAACATTTGGCTCGAGGCGAAGAACATTTACTGTTGATTGTGAAGACTGTATAAAAAATTTCAACGATGATTTCTATTTAAGCGTGTATAATAAGTTCAAGTATTTGAGAGACTCGGAAGTTTTTAAGTGTGGGACGTGTTTCGAGTCATACAACTCCTTGGAGTTCGCGATTCAGAGGTACAAGGTGACAAACGCCGATGCTTGTAAAAGTAAAATGATTTTGAGCGAACTCTGTACCGCTGAGATGAGTGAAGAAGAGCATGACTTCTCTAACTTCGGAGCTCTGCACGATATGTTGCCGGAGAGTACTACCGGGGATTTAGTAATGAAATTTAATGCTGTTGATGATTCAGAGACTGACATCAAGACGGAACCGGTGTCGCCGTAA
- Protein Sequence
- MYQNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCNVCGQNFGSPAGLIQHLSRGHNNYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGYEIRCRLCEKTFTTERNLKRHINQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNVSERDAIKCHLCEKVYTNNRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTRHNTNSQEHLTCNFCMKVIIGRENFDSHIQFHHQDTEMDGRNEFVCDSCDKSFEEEYCLRQHVKTEHSFKTFYKYCRRSLLKQYGMDTQNIYNCEYCDNSFLTVYELKDHMRVNHDTEYSLSTCNVCYNKFFCKETMAAHRNVCLPPPNVNTCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNIDEDGISFKCEHCDRIYYSDRSLKHHMKLKHTTDEEVECESCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALNIHLETKHLAEDQIYKCEECNVVFKGQEKFDAHNEVCHVNLVPTIKQKVLPRCIFCMKDFSTRKTLKRHIKKFHEDFDVDELATFGSRRRTFTVDCEDCIKNFNDDFYLSVYNKFKYLRDSEVFKCGTCFESYNSLEFAIQRYKVTNADACKSKMILSELCTAEMSEEEHDFSNFGALHDMLPESTTGDLVMKFNAVDDSETDIKTEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_00072251;
- 80% Identity
- iTF_00907241;