Lorn005065.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- clz9
- Assembly
- GCA_948473465.1
- Location
- OX419635.1:5009538-5011109[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-07 8.2e-05 22.5 0.0 4 39 19 55 16 58 0.86 2 2 5.9 4.2e+03 -2.2 0.0 24 31 363 370 363 371 0.81
Sequence Information
- Coding Sequence
- atggtcaggaattacaagaaaaagggtactaggagtggagaggtagacgaagtggcaatatcaaaagctatcgatgaagtcatactaagcaaagtctctttaagaaaatctgcagccaagtacggagtAAATCCACAAACTTTACAAAGCCGTCTCAAAAAGTTACGAACACGAGATCTACTTAGCGAAAATCGTGTTTTCGATTCTAAATTTGCATCGCAGCAAGTTTTAACAAAAATAGAAGAAGAACACTTAAATAAATACATCTTAGAGTGTTCCAAAATGCACTATGGACTAACATGTGTCCAAGTTAAAAAACTGGCATATGAATTTGCTAAGGCCAATGAACTCAAATATCCAGAAAGTTGGGATAGTAACAAGATGGCGGGAGCAGATTGGTTAGCAAGTTTCCGAAAACGCCATAAGAATTTAAGTTTGCGTAAACCGAAAAATACCAGCGCTGCAAGATCATTCGGGTTTCATAAAACGGCAGTGAATGATTTCTTCCAGAACCTGGAGAATTTATACTGCAAGCACAATTTTACTCCCGATCGGATTTTTAATTACGACGAATCTGGTATAACTACTGTGCTGAGCACACCGAAAATTTTAGCTGACAAATCCCAAAAACAAGTTGGTCAAATAGTGTCTGCGGAAACAGGAGAACTGGTGACATTTGGCGGTATTATTTCGGCCAGTGGAAACACCATACCACCTTTATTCATCTTCCCTCGGGTACATTTTAAGGACCACTTCATAGAAGGTGCTCCAGAAGGCTCTTTAGGTGTAGCTACGAGAAGTGGATGGATAAATTCGAGCATTTTTGTTGATGTTCTAAAGCACATTCAGAAACACACCTTATCTTCCAAAGAAAATCCGATATTGCTCTTATTAGACAACCATGAAAGCCACACTTCTATTGATGCCATCAACTACTGCCGGAACAATGGCATAGTGTGCCTTTCCTTCCCACCTCACACGACTCACCGCCTTCAACCATTAGACGTTGGAGTATTTGGGCCACTTAAATCTAAATTAAAAACATCATTCAATGACTGGCACGTTTCTAACCCGGGTAAAACACTTAACATCTACAATATCCCAAAACTCACAAAGATACCTTATTTGGAATCATTTAATGCAAGGAATATCACTAGAGCATTTGAAAAAACCGGAATATGGCCTTTCAATAAATTGATTTTTAATGATGAAGATTTTGCGCCAGTTCAAGTGTATCATTCTAATCCTGTAACGAATGACAATGAAAATACAGCTGGTGAGGAGCAGCGTGGAATACCCGATAATGAGCTTGTTACAGTTAGTTATGAACTCGCAGAAGTCAGTGGTGATGTTCCTGCTCGAACACGGACGACTTTGTCTAGAGATGTTTCGCCTTCACTGCTTTCACAACCTCTTCTATTTATGGATTTCGATAAACCTACACCATCTACTTCCAAACTATTGAAGACTCCAGAAATGATAAGGCCTTTCCCGAAAGTCCAAAGACGCAAACAAACAAGAAATGGTCGATCACTTGGAAAATCAAGGATTTATACCGACACGCCTGAGTAG
- Protein Sequence
- MVRNYKKKGTRSGEVDEVAISKAIDEVILSKVSLRKSAAKYGVNPQTLQSRLKKLRTRDLLSENRVFDSKFASQQVLTKIEEEHLNKYILECSKMHYGLTCVQVKKLAYEFAKANELKYPESWDSNKMAGADWLASFRKRHKNLSLRKPKNTSAARSFGFHKTAVNDFFQNLENLYCKHNFTPDRIFNYDESGITTVLSTPKILADKSQKQVGQIVSAETGELVTFGGIISASGNTIPPLFIFPRVHFKDHFIEGAPEGSLGVATRSGWINSSIFVDVLKHIQKHTLSSKENPILLLLDNHESHTSIDAINYCRNNGIVCLSFPPHTTHRLQPLDVGVFGPLKSKLKTSFNDWHVSNPGKTLNIYNIPKLTKIPYLESFNARNITRAFEKTGIWPFNKLIFNDEDFAPVQVYHSNPVTNDNENTAGEEQRGIPDNELVTVSYELAEVSGDVPARTRTTLSRDVSPSLLSQPLLFMDFDKPTPSTSKLLKTPEMIRPFPKVQRRKQTRNGRSLGKSRIYTDTPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246787;
- 90% Identity
- -
- 80% Identity
- -