Lorn015040.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- -
- Assembly
- GCA_948473465.1
- Location
- OX419643.1:3666929-3668071[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-10 7.8e-08 32.2 0.0 1 39 18 56 18 61 0.93
Sequence Information
- Coding Sequence
- atggtgcgaaactacaagaagacgccgggtacccgccactacaggaactatacggatgaaaccctcgaagaagctctgcaaaaagttacagatggggatgtgagcatcaacgcagcgtcggtaaattataaaataccattcggtactttatacaatagatataagggaatgcatggatcaactcctggagggcaacctgtatttacatatgttgaggaagttgcaattttaaaagccgccgcaacttgtgccgattggggatttccactcaccagttttgacttacgaatgtttgcaaaatcatatttagaacagcatggaagatatgaggctaaatttacaaataacattcctggcattgattgggcgatgagtgtcctaaaacgccacaataatggatatggtcaaagagttgccaccaatataaaaagagcaagggctgcagtaggccgggattcgatcaacgcctactttgataatcttgaaaaggttatggaaaacgtaccaccgtcgaacatatttaattatgacgagtcaaatttatctgatgacccgggcaagaagaagtgcatttacaggcgcggtgtaaaataccccgaaaaggtgatgaaccactcgaagagttgtactagtattatgatttgtggatctgccgatgggactttactgccaccatatgtaatctataagagcatgcacttatacgatacgtggaaagacagaggcatagctggatatccttgctgtcagcagccatgttgcagtcgtggcagcagatataataggactgcaagcgggtggatagacgcttcaacctttagagactggtttatgacctgtttcttacctcacgctaataggctcgaaggccaaaaagtgttaattggagacaatttgtcgtcacatttagattctgacgtattagaaacatgccaatcacataacatcagttttgtatgtcttgtgccaaactctacgcatatctgtcaacctttggatgttagtttttttcggcctatgaaagccgcttggAGAAAGACCCTCGAACAGTGGACGCTTAGTAACCCCAAAGCTTCAGCTGTACCAAAGGACGTTTTCCCACGACTTCTGAGAGAAAACTTAACAGAAATGGACAAAGTTTGA
- Protein Sequence
- MVRNYKKTPGTRHYRNYTDETLEEALQKVTDGDVSINAASVNYKIPFGTLYNRYKGMHGSTPGGQPVFTYVEEVAILKAAATCADWGFPLTSFDLRMFAKSYLEQHGRYEAKFTNNIPGIDWAMSVLKRHNNGYGQRVATNIKRARAAVGRDSINAYFDNLEKVMENVPPSNIFNYDESNLSDDPGKKKCIYRRGVKYPEKVMNHSKSCTSIMICGSADGTLLPPYVIYKSMHLYDTWKDRGIAGYPCCQQPCCSRGSRYNRTASGWIDASTFRDWFMTCFLPHANRLEGQKVLIGDNLSSHLDSDVLETCQSHNISFVCLVPNSTHICQPLDVSFFRPMKAAWRKTLEQWTLSNPKASAVPKDVFPRLLRENLTEMDKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00973696; iTF_00036577; iTF_00951733; iTF_00951734; iTF_00355036; iTF_01264383; iTF_01118215; iTF_00906059; iTF_00123289;
- 90% Identity
- iTF_00036577; iTF_00951733; iTF_00122307; iTF_01118215; iTF_00111563; iTF_00906059; iTF_01440943; iTF_00123289; iTF_01026012; iTF_01264383; iTF_00951734; iTF_00973696;
- 80% Identity
- -