Basic Information

Insect: Lithophane leautieri
Gene Symbol: -
Assembly: GCA_949152455.1
Location: OX424488.1:3440134-3459734[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.074 5.8 8.3 0.7 1 23 380 402 380 402 0.98

2 11 0.0036 0.28 12.4 8.8 1 23 409 431 409 432 0.94

3 11 0.39 30 6.0 3.2 1 23 436 458 436 458 0.97

4 11 0.11 8.3 7.8 2.0 1 23 463 486 463 486 0.97

5 11 0.0039 0.3 12.3 0.2 1 23 490 513 490 513 0.94

6 11 6.1 4.7e+02 2.3 0.2 3 20 527 544 526 546 0.88

7 11 1.6 1.3e+02 4.1 0.4 2 23 606 628 605 628 0.94

8 11 0.012 0.92 10.8 0.6 2 20 644 662 643 665 0.91

9 11 2.8e-05 0.0022 19.1 1.4 1 23 671 693 671 693 0.99

10 11 4.9e-05 0.0038 18.3 4.5 1 23 700 722 700 722 0.97

11 11 4e-05 0.0031 18.5 1.3 1 23 728 751 728 751 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.074	5.8	8.3	0.7	1	23	380	402	380	402	0.98
2	11	0.0036	0.28	12.4	8.8	1	23	409	431	409	432	0.94
3	11	0.39	30	6.0	3.2	1	23	436	458	436	458	0.97
4	11	0.11	8.3	7.8	2.0	1	23	463	486	463	486	0.97
5	11	0.0039	0.3	12.3	0.2	1	23	490	513	490	513	0.94
6	11	6.1	4.7e+02	2.3	0.2	3	20	527	544	526	546	0.88
7	11	1.6	1.3e+02	4.1	0.4	2	23	606	628	605	628	0.94
8	11	0.012	0.92	10.8	0.6	2	20	644	662	643	665	0.91
9	11	2.8e-05	0.0022	19.1	1.4	1	23	671	693	671	693	0.99
10	11	4.9e-05	0.0038	18.3	4.5	1	23	700	722	700	722	0.97
11	11	4e-05	0.0031	18.5	1.3	1	23	728	751	728	751	0.95

Sequence Information

Coding Sequence: ATGAGGTGTTGTGTGCCGAGTTGCAAGAATGATTCGAGACACATATCCAAATTACAGGGAATTACGTTCCATGTCTTCCCCAATGAGTCGTCACTCCGTAAATCCTGGCTCAAGGCCCTCGGTAAAGAGTCTTGGGAACCGAGGGACAGGAGTGCGGTGTGCTCCGAGCATTTTTTGTGTGAAGACTTGTACGAGACTAAGAGTGGACTAAGGAAGGTTAGGGCTGGGGCTGTGCCTTTGATTGTCcaggATTCCTCAAACTGTGATTATGGAGAACCTGCCAGTTTGAAGGCTTGCAGAATTTGCCTAGTAATGGATGTAAAGTTAGTACCAATAAGAATCTATAAACTGGAACAAGCATATGAAAATCTCACAGGAATATcaCTCTGTGAAGAAGACAAATTGCCGCAGAAGCTATGTCTGGAGTGTGTACAGAGGTTGATGAACAGCAGTCAGTTCAGACTCAAGAGTTTAAGAGCCAACTCTCTCATGCTAGAGGTTATTAAGAAACATGATTGTTTAACCGtccaaaacataaaaacaataaaccgATTAAATAACCAATTAACATCAACGTTATCACAGAAACATTTCGAAGTAAATCACTACGATTCCTACATTGAATATGAAGATGAACCAATAATCATTGAGGATAAATCTTCCCGTACATGCAATGTAGAAATCAAAATAGAAAACGAAATCTTTCTCACGGAAGATATCACAGACAAAAACGACGACGGACTTAACGTCGACGGACTTAACGACGACGGACTTAACGATCACGGAGTTAACGACGACGGAATCACGGATGTGTTGAACGATAAAGATGACATTTCTGAAAAAGAATACGTGTTATCTGAAAGAGATAACTACTCTTCGGATGACAGTCTTCCTTTAGAAAAATGCAAGACAAAGAAAACGAGAAAAAGAaaggagaaagaaaaaaaaccggctaaaaCCGTGAAGAGGgttaaaaagataaaagatcCCACGGAACCAAAGATAGATAGACGGAGAAAACCGTTTTTGAacgatgatttgaatgaaactctTTTTACAATCACTGATTTGACATTTGAAGAGCAAATCGCTGAGATAGTAAAAAGGCAGGATAGCTCCAATTATAAGAATTCTGTTTATAAATGTACTGCGTGTTTTAAAGGGTTTCTGGATGAAGATGCGTACAACAGCCATATGACTCGGCATACAGATcAATGCGGCGAACACGAATGTGAAATCTGTAAGACGCATTTCAAACATCCGCACGCGCTCCGAAAACATATCACAGCGCACCACACACAAAGGTTCAGCTGTAAACAATGCACCTACGTCACGACCCATAGACAAACGGCCAGGCTTCACGAGCGGTGGCATAAGGGCACGAAGTATAGGTGTCCTCATTGTCAAGATGAGTTTGTTAAATTCACCACTTACATGGGTCACATACGTATAAAGCATCCCTCAGACTTCGTGTGTGAGCTGTGCGGGTACTCCTTCGTCAGTGCGAAGGGCATTGAGCTCCACAAGAAGCTTAAACATCGACTGGAGAATGCACAGATACCAGAAGATGGTCCGTTATGTGAACTGTGTAACGTCAGGTTTGTGTCAACAGAGGCTCATAGACGCCATCTCAGTGTTTCTGCTAGACATAATACAGGTACTGACAAAGATTCGAGAGAATCCAACAAACCCAAAAAGGGCAGGAAGTCCAAAGAATGCAAGGAGCTCGAACGAAGGGCGCGAGAGAAGGACAAAGACTCCGATGAAAAGAGACGGATATATCCCAGTCAGATGCGCAAGGCGGAAGGCCCGATACCGTGCGAACAGTGCGGCCTTCAGCTAGAAGACTCTCGTGCGTATCACGGCCACTTCAGACGTATGCATCCGGACAAGAATCGAACCAACTATCCCTCGATGAAGTCACCATGCATGTGTGAAGTTTGTGGGCGAATGTTCCAAAGTTATGCCCTCTTAAAGGACCATACGTGGGTTCACACCGGCGAACGTCCATTCAAATGCGACTCCTGCGGCAAGTCATTCAGAATGAAACAACGCCTCGTTGCTCACAGGAGGGTTCACAGTCAAGTGCGCGCCAGCTACGTGTGCGCGCTGTGCGGGAAGCACTTCTCGACGCACAGTAACCGACAGAGGCACATGTTTatCCACACCGGTCTAAAGCCGTTCAAATGCGAGATGTGTGGCAAAGGTTTCAAGCACGCGAGTGAGAAACGAGCTCACATAACATACGTACATCTTAAGAAGCCGTGGCCGAAACGCGCTAGAGGGAAGCGAAGACCTGACACTAGACAGATACCAGAAGATCAGGACATGGACATGCAGGCCCCCATGTGGCCCCCCTGCGACCCCAAGATGGGAGACATGGGGCCCATGATTGACGACAAACCAGTTTACTATAATTTGAAGatttaa
Protein Sequence: MRCCVPSCKNDSRHISKLQGITFHVFPNESSLRKSWLKALGKESWEPRDRSAVCSEHFLCEDLYETKSGLRKVRAGAVPLIVQDSSNCDYGEPASLKACRICLVMDVKLVPIRIYKLEQAYENLTGISLCEEDKLPQKLCLECVQRLMNSSQFRLKSLRANSLMLEVIKKHDCLTVQNIKTINRLNNQLTSTLSQKHFEVNHYDSYIEYEDEPIIIEDKSSRTCNVEIKIENEIFLTEDITDKNDDGLNVDGLNDDGLNDHGVNDDGITDVLNDKDDISEKEYVLSERDNYSSDDSLPLEKCKTKKTRKRKEKEKKPAKTVKRVKKIKDPTEPKIDRRRKPFLNDDLNETLFTITDLTFEEQIAEIVKRQDSSNYKNSVYKCTACFKGFLDEDAYNSHMTRHTDQCGEHECEICKTHFKHPHALRKHITAHHTQRFSCKQCTYVTTHRQTARLHERWHKGTKYRCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLENAQIPEDGPLCELCNVRFVSTEAHRRHLSVSARHNTGTDKDSRESNKPKKGRKSKECKELERRAREKDKDSDEKRRIYPSQMRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWVHTGERPFKCDSCGKSFRMKQRLVAHRRVHSQVRASYVCALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRARGKRRPDTRQIPEDQDMDMQAPMWPPCDPKMGDMGPMIDDKPVYYNLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038854;
90% Identity: iTF_00746209;
80% Identity: iTF_00906229;