Llea025483.1
Basic Information
- Insect
- Lithophane leautieri
- Gene Symbol
- -
- Assembly
- GCA_949152455.1
- Location
- OX424487.1:5001331-5007775[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1 78 4.7 4.8 1 23 317 338 317 338 0.98 2 9 0.012 0.93 10.8 1.7 2 23 365 387 364 387 0.93 3 9 1.8e-05 0.0014 19.7 0.6 1 23 408 430 408 430 0.98 4 9 0.069 5.4 8.4 0.4 1 23 434 457 434 457 0.93 5 9 0.00059 0.046 14.9 0.4 2 23 463 485 462 485 0.91 6 9 0.013 1 10.6 1.3 1 21 491 511 491 514 0.90 7 9 5.6e-05 0.0044 18.1 4.4 1 23 521 544 521 544 0.98 8 9 4.5e-05 0.0035 18.4 1.4 2 23 551 572 550 572 0.97 9 9 5.4e-06 0.00042 21.3 0.3 1 23 578 600 578 600 0.98
Sequence Information
- Coding Sequence
- ATGTATGGACAATGCCGATGTTGTATGGCGAATGGACAGCACAGAGATGTGACGAAAGAATActattacaataatataaaagaagTTTACAAAGATATTTTCTtggaatgttttaatttatcaTTATCACCACATAATCTTATAAGTCCCCTGATATGTGAGAACTGCGTGCATCGCCTCCGTGATGCGACCAGTTTCCGTATGATGGTGACTGCCACTGAGGAGCAGTTACTCAATGCTGTCATTTTTAAGAGTGATCCGGACAACGATACTGAATTTGTTGATGTTACAGGTCCCCAAAACTTTACAACCGAAATCAAAATAGAAAGTGAAGCAGATATTGACATGGAGccagatattttattacaagACGGTATGGAAGGCTTTAAAGATAATGAACAAATGACTGATGGTGAACGGGTGAATGACAATGAACGAACGACTTATGAACGGATGATTGAGGAAAGAAtgaatgatgacgatgattggTCCAGTGGGTCAAGTGAAAATGGGCTTGTGATTGATGAGACGAGAGAAAATGGATATACAGACTCCGAAGATTTTGTTACTGATGACGATATTGATGGTGTCGGTGTTGATGATTGTGaaagtACCTATAGCTCAATAACTATGAGTACCACTAGTGCTGTGGATGACGAGCCATGTGAAATAATAGATGGAGAGTCAAAGCTGTTGGCTCGCTTCCTTACATCCGCCCCGCAGCCACTGCCTAAACGGAGTGACCTGACCAAGATATGCCCCGTTTATGATGAGCATTTGAGAAAACTTGAAGATAAAATAGTCGATTCAAAATCAATAGAATGGTATTTCAAGATTCCCGatttaaaagagactttaatGTCAGACAAGCAAGTCCTCGCCGTAAATGCGACCACAATATTTGAATATAGCAACGCATCTGCCTTCAAAACTAAAATGAGGAACGGCTATCCTTGCTTTTACTGTCGAGAAGTATGCAAGTTTGACAAATTGAGAGAACATCAAAAGAAACACCCAAAAGGAAGCATCTACAAGTTACTTACCAAATACAATGCAGATGAATTTGTTGTCTATGCCGATATCACAGACTTAAAATGCACAATTTGTAAAAAGAAGATAAAAAAACTCAACGAATTGAGGACTCATTTGAGTGAGAAACACGGAAGAAAAATATTCGCAAGTCCGGACAGAGTAATCCCTTTTAAGTTGAAAGAAACAGACTTCGAATGTCAGACATGTGGAAGAAAATTTGAAACTTTTGGCGCCGTTGAGAAACATATGAATACTCATTTTGGGAGTTTCATGTGTGAAGCATGCGGGGCCGGTTTTATAACGAAACACAGATTAGCAGTACATAATTACACTCAACATAAAGACGAACAAGTGGTTTGCGAAGTGTGCAAAAAGAGCTTTCGAACACAAATGAAGTATCGCCTGCATTACGAAGGTGTtcacaaaaatatgaaaaaattcaaatgcACAAAATGTCCGGAGAAATTCATCGATTACTTTACTAGGCAAAAACATTTGGTAGATGTGCATTCTGAAGCCCCTTTGTTGTACAAATGTAATGTCTGTGACAAAGGTTTTAATAGAAGATTTAGCTTATCTTCACATGTGAAACGTTGTCATATGGacgagaaaaatattaaatgtcagGAGTGCCCCTACGCTTGTTATACTAAGAGTGAATTGAAAGATCATATGATCAAACATCAGAGTCCGCAGAAATTTGAATGTCCAATTTGTAAGAAGACGTATGGTAGGAATAGGTCGTTGGCGATGCATATAAAGATACACAAAAATGATAAGAGTTAG
- Protein Sequence
- MYGQCRCCMANGQHRDVTKEYYYNNIKEVYKDIFLECFNLSLSPHNLISPLICENCVHRLRDATSFRMMVTATEEQLLNAVIFKSDPDNDTEFVDVTGPQNFTTEIKIESEADIDMEPDILLQDGMEGFKDNEQMTDGERVNDNERTTYERMIEERMNDDDDWSSGSSENGLVIDETRENGYTDSEDFVTDDDIDGVGVDDCESTYSSITMSTTSAVDDEPCEIIDGESKLLARFLTSAPQPLPKRSDLTKICPVYDEHLRKLEDKIVDSKSIEWYFKIPDLKETLMSDKQVLAVNATTIFEYSNASAFKTKMRNGYPCFYCREVCKFDKLREHQKKHPKGSIYKLLTKYNADEFVVYADITDLKCTICKKKIKKLNELRTHLSEKHGRKIFASPDRVIPFKLKETDFECQTCGRKFETFGAVEKHMNTHFGSFMCEACGAGFITKHRLAVHNYTQHKDEQVVCEVCKKSFRTQMKYRLHYEGVHKNMKKFKCTKCPEKFIDYFTRQKHLVDVHSEAPLLYKCNVCDKGFNRRFSLSSHVKRCHMDEKNIKCQECPYACYTKSELKDHMIKHQSPQKFECPICKKTYGRNRSLAMHIKIHKNDKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00375680;
- 90% Identity
- iTF_00907342; iTF_00037200;
- 80% Identity
- -