Llea026213.2
Basic Information
- Insect
- Lithophane leautieri
- Gene Symbol
- -
- Assembly
- GCA_949152455.1
- Location
- OX424488.1:3929891-3948339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.013 1 10.7 3.6 1 23 272 295 272 296 0.97 2 13 0.21 16 6.9 1.7 3 23 304 324 302 324 0.96 3 13 0.0003 0.024 15.8 0.3 2 23 360 382 359 382 0.96 4 13 0.00066 0.051 14.7 0.6 5 23 387 406 386 406 0.93 5 13 1.4e-05 0.0011 19.9 2.0 1 23 412 434 412 434 0.97 6 13 6.4e-05 0.0049 17.9 2.9 1 23 472 495 472 495 0.91 7 13 0.0019 0.15 13.3 1.4 1 23 501 524 501 524 0.95 8 13 6.4 4.9e+02 2.2 3.0 1 10 532 541 532 546 0.86 9 13 0.076 5.9 8.2 4.6 1 23 768 791 768 791 0.96 10 13 0.0083 0.65 11.3 2.0 3 23 800 820 799 820 0.98 11 13 0.055 4.3 8.7 2.2 2 23 856 878 855 878 0.95 12 13 0.00065 0.051 14.7 3.0 3 23 882 903 880 903 0.97 13 13 1.3e-05 0.001 20.1 2.2 1 23 909 932 909 932 0.97
Sequence Information
- Coding Sequence
- atggaagaAACATTAAATATATGCTTGACATGCCTAAGCACAGACCGCTGCCTCGTTCctttgcataaaataacaacGTTACTACAAGAAATACATTTTGCAGAGTTGAAAGCGTTCTATGGTGGAGTATGCTGGGAGTGCTGGAGTATCCTGGCGAAGTTCTATAGGTTTAAGAAGAAGGCTACGATAGCACAAGTGACTTTGTCACAAACTACAGAGcttttaaatataaaaccacTAACAACATTGACATCAAAAACCAATGTTTTCTATGACTATCAGTATACCTTTTGTGCGGATCCTTTATCAAACTGTAACATAAAACTAAAAGCTGAACCAAATTCCATAAAACAAGAAATCATAGACCAAAatgaaaacataaataacaattCAGATATTGATAAAGAAGAGGAAGTTGTCTATGATAATATAATAGAAACAAAACACGATGATAATTTATTAGGAAAACAAGAAATTCAAGACCGTAAAgcatatgatgatgatggttgTATAAACAACACttcagattttgatgaaaaaacttCAGACTTTAATGAAAAATTGTCTGAAATACctgaaaaaatagaaaaagtTGAAACCGATGAAAAACTTAGTGAATCAACCAAAAATGTTAACGTAAAAACTATTGAAAAAGAACGCAACAaagatttacaaaaaagaaaagataaaagGGATAAACAAAGAGATGTAGAAGAGTTCCAAGAGAAGTTTGTACAAGTTTTATTGAGTCAAGAAGAGATGCTCAGAGCAAGAGATGAGAAGAGAAATCATCATAATTTTAAGAAGCTTCCATACAAATGTGATAGTTGTGTACTAGGGTTTACAAGAAAGGATACGTATAGTTTACATTTGAGGAAGAAGCATCATGAGAGCATTGGCGACCAAATCTGCGATGTATGCAGCATCCGTTTACGTCACAAACTAGCTTTGAATAATCATAGAAGCAAGCACTATGTGGTGTACAGATGTAAACTGTGTAGATATGAGGCGCATGAGTTTATGTCGGCAGTCAATCATTGTAAGACCAAGCATGCAGCAGACAAGCCTGATAGCATACATTGTTCACAGTGTAGTGTTGTGGTCAAAACCCCAGACGATTTAGAAAAACACATGCAGACGGTACATACCGTTTTCTGTGACTGTGGTATTAAATTCAAAGACAAGAACAATCTTAGAAGACATTTGAGctgGGCGCATTCCCTCCTACGCAACTTCATATGTGatatttgcaaaaaaactttcaaaactAAGACACGACTAGAAACCCACATGGTGAGGCACAGCGGCAATATTGCCAAGAAGCTAGCATATTGCCAACAGTGCAATgtgcaatataaaaatatacaggtCTATAGGATGCATTTGAAGTCTAGTGCTAATCATTCAGAGGGATATCCATGTTCAGAGTGCAATAAAAAATTCAGGTCGAAAGGATATTTGAAGCAACACTATGACTTCTATCATTTACGTAAATCGCAGTACAAATGTGAAGTGTGCAATAAGCTTTTTATATCAAATTGGCGTTTACGTAATCACAAACAACTGTACCATGGTCTCAGTAGACCTAGAAATCATTGCTGTAGCACATGTGGCAAGAAATTCTTTCTACAAGAGTCCCCAGGTGGAGTATGTTGGGAATGCCGGGGTATCCTGGCAAAGTTCTATAGCTTCAAGAATAGAGCTAAAATTGCACAGGAGACCTTATCACAAGCTAAAGAGCATTCCATTATAAAATCTCTAACAACACTTTCTATAagcaaaagtttttgttttttggtttgtGAATCCACCTGGGACACAAAACTAAAAGAAGattctataaaaaaagaaaatgtagacCATAGTGATGACATAGACAAAATTGATGATAAACCAGAACAAGTTGATGAAAGTTTAGACAACACTTTAGTAACAGATGAAATTCCAATTGAAAACCCAggaaaatacgaaaatattCATTCAGAAGCAGATTTTATTGAAGATAAATACGATGATAATTTGTTTGGAAAACAAGAAAGATTTTCTCAAGatgaaaaatttaatgaaaaaactatACATTTCGATAGTCTAGAAACAAAACCCAACATAAATTTaccaacaaaaactgtcagtAGACAAAAAAAAGATGGCGTCAGAACTACCAAAAAGTTATCACAAAAAGTGAGAGACACAAATGATACAGAATTTGAAGAGAAGTTTGTACAAGTAGTACTAAGTGATGAGGAGATGGTACGAGTCAGAGAAGAGAGACGAAATCATCCATCGTTCAGGAAACTGCCCCATATATGTCACGGTTGTGTGCTCGGGTTCAGAAAGGAGGAGAAATATCGAAGCCATATGAAGAAGAAGCATGATGAGagcATCGGCAGCCTCCTCTGTGAAGTATGCAGTGTCAGATTTCCCCACAAACTAGCGTTAAATAAGCATAAAAGAAAGCACTATGTGGTGTACAGGTGTCGGCTATGCAAATATCAGGGGAATGACTTGCGCTCAGCGGTCAATCATTGTAAGATCAAGCATGCGGCCGACAAACCTGACAGTATACACTGTTCACAGTGTTACTTTGTGGCCAAAAATTCACAACACCTAGAGGAACACATGCAAATGGAACATCAGTTTTGGTGCAACGAATGTGGAgaaaaattcaaatcaaaacgACATATAAGACTTCATATGAGTCGAACACACGGTCCAAAACGCGCCTTCAAGTGTGatatttgtaaaaaaggttttaaaacaAAGATGCAGCTGGAATCTCACTTGTCCCGATACCATGGTAGCATAGCGGAGAAGCTCTCCTATTGCCAAGCATGCGATATTCAGTTCAAAACCATAATGATATATAGGATGCATATGAAGAATTCTGCTAATCATTCGGAAGGGTAA
- Protein Sequence
- MEETLNICLTCLSTDRCLVPLHKITTLLQEIHFAELKAFYGGVCWECWSILAKFYRFKKKATIAQVTLSQTTELLNIKPLTTLTSKTNVFYDYQYTFCADPLSNCNIKLKAEPNSIKQEIIDQNENINNNSDIDKEEEVVYDNIIETKHDDNLLGKQEIQDRKAYDDDGCINNTSDFDEKTSDFNEKLSEIPEKIEKVETDEKLSESTKNVNVKTIEKERNKDLQKRKDKRDKQRDVEEFQEKFVQVLLSQEEMLRARDEKRNHHNFKKLPYKCDSCVLGFTRKDTYSLHLRKKHHESIGDQICDVCSIRLRHKLALNNHRSKHYVVYRCKLCRYEAHEFMSAVNHCKTKHAADKPDSIHCSQCSVVVKTPDDLEKHMQTVHTVFCDCGIKFKDKNNLRRHLSWAHSLLRNFICDICKKTFKTKTRLETHMVRHSGNIAKKLAYCQQCNVQYKNIQVYRMHLKSSANHSEGYPCSECNKKFRSKGYLKQHYDFYHLRKSQYKCEVCNKLFISNWRLRNHKQLYHGLSRPRNHCCSTCGKKFFLQESPGGVCWECRGILAKFYSFKNRAKIAQETLSQAKEHSIIKSLTTLSISKSFCFLVCESTWDTKLKEDSIKKENVDHSDDIDKIDDKPEQVDESLDNTLVTDEIPIENPGKYENIHSEADFIEDKYDDNLFGKQERFSQDEKFNEKTIHFDSLETKPNINLPTKTVSRQKKDGVRTTKKLSQKVRDTNDTEFEEKFVQVVLSDEEMVRVREERRNHPSFRKLPHICHGCVLGFRKEEKYRSHMKKKHDESIGSLLCEVCSVRFPHKLALNKHKRKHYVVYRCRLCKYQGNDLRSAVNHCKIKHAADKPDSIHCSQCYFVAKNSQHLEEHMQMEHQFWCNECGEKFKSKRHIRLHMSRTHGPKRAFKCDICKKGFKTKMQLESHLSRYHGSIAEKLSYCQACDIQFKTIMIYRMHMKNSANHSEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -