Basic Information

Insect: Lithophane leautieri
Gene Symbol: -
Assembly: GCA_949152455.1
Location: OX424484.1:10312468-10334776[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.5 2e+02 3.5 1.5 3 15 58 70 57 73 0.67

2 9 0.0024 0.18 13.0 1.7 1 23 534 556 534 556 0.96

3 9 0.00046 0.036 15.2 0.9 1 23 562 584 562 584 0.98

4 9 1e-05 0.00081 20.4 2.4 1 23 591 613 591 613 0.99

5 9 2e-06 0.00016 22.6 0.4 1 23 619 641 619 641 0.93

6 9 6.7e-08 5.2e-06 27.3 0.1 1 23 647 669 647 669 0.98

7 9 2e-05 0.0016 19.5 2.7 1 23 675 698 675 698 0.96

8 9 0.00011 0.0086 17.2 2.7 1 23 704 727 704 727 0.96

9 9 5.2e-05 0.004 18.2 0.9 2 23 734 755 733 755 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.5	2e+02	3.5	1.5	3	15	58	70	57	73	0.67
2	9	0.0024	0.18	13.0	1.7	1	23	534	556	534	556	0.96
3	9	0.00046	0.036	15.2	0.9	1	23	562	584	562	584	0.98
4	9	1e-05	0.00081	20.4	2.4	1	23	591	613	591	613	0.99
5	9	2e-06	0.00016	22.6	0.4	1	23	619	641	619	641	0.93
6	9	6.7e-08	5.2e-06	27.3	0.1	1	23	647	669	647	669	0.98
7	9	2e-05	0.0016	19.5	2.7	1	23	675	698	675	698	0.96
8	9	0.00011	0.0086	17.2	2.7	1	23	704	727	704	727	0.96
9	9	5.2e-05	0.004	18.2	0.9	2	23	734	755	733	755	0.97

Sequence Information

Coding Sequence: ATGAATCAGTGTTGCTTTATCTGCGACAACAGGGCTGGGCTCTCACTAAGAAATGCTTCCAGCCTGTTTGGAGAACATAACACATTACAATCTGGCAAGAAAGTATCAGAAGTTGTGAGTGAGATTGTGGGCAAACCGGTGCTAGAGGATAAAGTACATACTAATATACTGTGCAAGAAATGCTTCAAGACATGCTCTGACTATGATAACATTCAAGTCAGactacaaaaaataaaaacggatTTACAAGAACAATTCAAATTATCATTACATAATCATAATTTAGACTATGAAAACTATGAGAAGAATGAATGTTCACCCCCAAAGCCGAAACCAATCATAAGGAAGAAGTTGGTGTTACCAGCATCAAAATTACAACCAATACCACCGGATTTGTTGCTCAAAGTGGGGAAATTGGCATCGTTTACAAAATCAAACACGATTTTACCACAAATTAAGCCGTCCACAGCCTCAATGTTAAACTTAAAAGTAACGGTTGGATCATCAGTCCTGACACAAACGATAAAAACGTACAGCAGTAAACCAATTGAAAAACCTAATTTAGAATCAAATTCCATCCTGACTTCGATCTCAAACGCTTTGAAAGATGACCTAGAAAATATAGTGACTACTCAAAGTAATATGAACCCTATGAGCCAAAAGAATTCAATGTTGAGTTTCAATGTGAACTCTTTGCCCAAAGATTTTCTCTCTGGTGCCATTTTGAGGAAATTGGATGAAAAAGATGTTGATTATGAAAAGAGGGAGGAGACTAATGATGATCATCCTATGGAGATTGATGAAGATTGTTTGTCTGCGGTTCCTGTAACGTCTGCTGATGGTCGAAACTTAGTATTAGAAGTAGAAGGAGTAGAGTCAAAATCCGAGGCAACTGGCGAAGTGAGCGACTACCTAAACCTGCCGTCGCTTGATGGTGACGCTGATGAAGAGAATGACGCACAGAAGTACATCCTCGGCAAGTTGGAGATACTCAACGAAGAGgatgacgacgacgacgacgatgaaGGACACACAATAGTCGTAGATAGTGAAAACGGCTCAATTCTCCGAATGGTGGCCGGACAGAAGTTTATCTACGAGGGCGGAGAGATATCGTTGGTGATGcccgatgatgatgatgagcagCCAGACGATGATGGTGATCATCTCGAAAATGGTGATAGTCAAgATTCTAATGATGAATCTCAAATCGAGTTACAAGTATCTGGTGACGAGGAAACTGCGAACGCTATCATCGCTGCTGCTCAGGAACAAGGCGGTGCCTTCATAAAGGTGGAGTCAGGCGAGATGTTCCGCGTGAAGTCGGTGTCGAGCGCGACGGGCCAGCGGCCGGACGCGCCCTTGCAGATCGTGGCGCGGATTGGGAACTTGTTCAAATGTTTATTGTGCCAGAAAAATGACGAAACCCCCTCAAGTGTTGAAGATGCCGACACAATGATGCGTCACTTAAAATCACAGCACGACGCGAGAATATACCTGTGTCGCTTCTGTGGCGACGTCATGAGGAAACGCACGGAATATGCCACGCATATagCGTCGCACGCGCAGCCGGCGGCGGGCGCGACGCGCGCGGGCGCGCACCGCTGCGGCGCGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCGCGCTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCATCTGAAGACTCATGCGGTTCGTCCGCGACCCTACAAATGCACACAATGCGGTAAATCGTTCCTCACACAACAAAACCTGAATCAGCATGAGAAAACACATTCAGGAGTTAAGGATTTTGTCTGTAATATATgcaacaAAGCCTTCAGTACTCAACACAATTTGGAAGTTCACGGCGTGGTTCACTCCGGGAACAAAGCGTTTGTGTGCAGTGTGTGTGGCAAGGCGTTCGCTAGGAGGGCAGAGCTGAGGGACCATATGCGGATACATACGGGAGAGCGTCCATTCTCGTGTGATATCTGCGGCTCTCGTTTCACTCAACGCTCGAACTTACATTCGCATCGCAGAGCAACACACTTCAACGATAAACGATACCACTGCGAACTGTGTCCGAAGAAGTTCAAGAGGAGGAGATTACTGGAATACCACATAAAGGCGTCGCACACGGGCGAGCGGCCCCTCAAGTGCGGCATCTGCCAGCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCTTATGTCTGTGAGAATGGTTCTGAGCTAAACGTTTAA
Protein Sequence: MNQCCFICDNRAGLSLRNASSLFGEHNTLQSGKKVSEVVSEIVGKPVLEDKVHTNILCKKCFKTCSDYDNIQVRLQKIKTDLQEQFKLSLHNHNLDYENYEKNECSPPKPKPIIRKKLVLPASKLQPIPPDLLLKVGKLASFTKSNTILPQIKPSTASMLNLKVTVGSSVLTQTIKTYSSKPIEKPNLESNSILTSISNALKDDLENIVTTQSNMNPMSQKNSMLSFNVNSLPKDFLSGAILRKLDEKDVDYEKREETNDDHPMEIDEDCLSAVPVTSADGRNLVLEVEGVESKSEATGEVSDYLNLPSLDGDADEENDAQKYILGKLEILNEEDDDDDDDEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPDDDDEQPDDDGDHLENGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSATGQRPDAPLQIVARIGNLFKCLLCQKNDETPSSVEDADTMMRHLKSQHDARIYLCRFCGDVMRKRTEYATHIASHAQPAAGATRAGAHRCGACGKCYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHAVRPRPYKCTQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCSVCGKAFARRAELRDHMRIHTGERPFSCDICGSRFTQRSNLHSHRRATHFNDKRYHCELCPKKFKRRRLLEYHIKASHTGERPLKCGICQLSFVYPEHYKKHVRIHSGERPYVCENGSELNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00726717;
90% Identity: iTF_00908166;
80% Identity: -