Llea018617.1
Basic Information
- Insect
- Lithophane leautieri
- Gene Symbol
- Zfy1
- Assembly
- GCA_949152455.1
- Location
- OX424477.1:794748-801935[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.06 4.6 8.6 0.5 2 23 253 274 252 274 0.96 2 15 1.2 97 4.4 3.3 6 23 286 304 286 304 0.95 3 15 1.2 91 4.5 0.2 3 23 316 337 315 337 0.92 4 15 7.9e-08 6.2e-06 27.1 1.0 2 23 360 381 360 381 0.97 5 15 1.2e-05 0.00092 20.2 2.3 1 23 387 410 387 410 0.96 6 15 0.0061 0.47 11.7 0.0 1 23 416 438 416 438 0.97 7 15 1.5e-06 0.00011 23.1 2.0 1 23 444 466 444 466 0.98 8 15 3.1 2.4e+02 3.2 0.7 1 9 472 480 472 482 0.90 9 15 0.41 32 5.9 3.5 1 23 593 615 593 615 0.95 10 15 0.0004 0.031 15.4 2.0 2 23 622 644 621 644 0.92 11 15 4.2e-06 0.00032 21.6 1.5 1 23 650 672 650 672 0.98 12 15 1.2e-06 9.7e-05 23.3 4.4 1 23 678 700 678 700 0.98 13 15 0.00037 0.029 15.5 0.8 1 23 706 728 706 728 0.97 14 15 0.00028 0.022 15.9 2.2 1 23 734 756 734 756 0.93 15 15 0.00093 0.072 14.3 1.7 1 23 762 785 762 785 0.93
Sequence Information
- Coding Sequence
- ATGAATAATGAAACCGAACAAATATTTCTACTAAATCCTGCCCCGAGTCAGTCTTGGGCCCCCTCGCAGAATACGGGCGCCCTGACACCGTTGCTCAACTCGCAGGGTAACCTTGATAATGTCCGAGATTTTTCGAATGTATGTCGGACATGCGCCACCATCACAGAGTTTGTTATGCCCATATTCTCTGGAGACGGGCTGCAGAACAACTTAGCTGAGAAAATAGAGAGACACTTGCCAATACAGGTACGGGAGTGCGATGAGCTACCGCTGGTGGTGTGCTATCAATGTGCCAGCACACTGCTGGCATGGCATGAGTTGGTGAAGTGTTCCATTCAGGCCGACGCAGCCCTTCGTGCGAAGATCTGCTCCAACCAACAGGTCTCTGTTGTACctaagAAAACAAATCCACCTGACGTCACCATTAAATTACGTTCAAGTGTAGAAGATGAAGCACAGAGCAAGTTGTTTTCCACGAGTGTTAGAAATGCTCTCGTTGACTTCCATATTGATCTGGATGAAGATGATACTGATGTAGAGTTTGTTTGCCAAAAATGTGTGGAGAAGCCAGCGCTGACCACTGTGCACAGCCTTGCTGAACATATCAGACACGACCACTCTCTCGACACACTCAACAATACTGTTAAATCATTCATCACCAACTACATAACGTTCGAACAAGTGCTAGAGGAGGATTCTGAGAGAGAAACACAATCTGACTCTAAAGAGAAGTCCCAGATAGTTCTGCCGAGCCTGCACTGTCCGGTCTGCGCTAGTGTGTTCTCTTCGGCCACGCGGCTCGTGTACCATCTCAACAAACACGTGGAGGTGAGTATGGCGGCCGGCGCCATGTGCTGCCACCACGTCTACAGTGACAAGAAACACTTCGTGCAACACTTGCAAGAGGCACATGTCGACAGGACAGCCGATGAGGCGGTGCCAGTGTGCGTCAGCTGTGGCTTCACCGCAGACCATCCCGAAGAAATGAAACAGCATTATAAAGGCGCGCACAACGATGTGAAAAGTGTGAAAGAGAAAAATGTTGAAAATCCAAACAACCAGAAGTACATCCCAGCGGTGTGCCCCGAGTGTAACAAGACGTTCTCCAACAAGTACAACATGTTCGCGCACATGCGCAGTCACACGCACAGCGCGGTCTATCCGTGCGATAAGTGCAACCAGACCTACCGCAACCAGGGGAACCTTACTCATCACAAGAGGCTTGCGCACCAGGGAATACTCAACTTCATATGCGTTGAGTGCGGAGAGCCGTTCCCCAGTCGGTCGGAGCGTGACATACACGCGCGCATACACTCGGGAGACACGCCCTACAAATGCCCGCACTGCGGCAAGTCGTACCGCGCCAAGAACACGCTCACACGACACCTCGAGATACACGCAGACATACGCAAATACGAGTGCAAGATCTGCCCCAAAAAGAGCCCCTGCGACTTGCCCGAGGATCTCCGCAGTGCCCCCTCTGACCTGTCCGAGCTATCTGATGACGAGCCGCTAGCCACGTTCGCTACCAAAAAGCCCGCGAAACTCTATAGCAACTTCTACAGAGCACTCATGAACTTTAGAGACCATTTTGTTAGTGATCAACATCATAAAGATTATCCTGACTTGACCGATTCGAGCGTGTCTGACGCAGAAGAGAATGACGTGGACAGGTTCGATGACCTGACGCAGTGCAACATGAGGCGAGACAGACTGGACGAGGAGACGAGGTTAGAGCTGAGAGAAGTGCAGAACAAAATCGACAACAAAACATACTACACGTGTAAGATCTGCAGCAAGAACCTGAGCTCTGCGCACACTTACCTGTTCCATAAGCGCATCCACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAACGGACTGCAGCGGCACCTCACAGAGACACACGAGCGCGTGCGCCGGTACAACTGCTCGCTTTGTACCAAGAACTTTGCAAACTCACAGAATCTCAAGCAACACTTACGGATACACACCGGAGAGAAGCCTTTCGTGTGTTCTCACTGCGGGAAGAGGTTCACTCAGAGCGGTTCGTTACACGTGCATCTGAAGACACACAGTGAACAGTTTCCTCACGAGTGCGCGGAGTGTGGGGCTAAGTTCAGACTGCGATCGGGGCTGGTGCGGCATAGACTGAAGCACACGGGCGAGCGGCCGCACGTGTGCGCAACGTGCGGCAAAGGGTTCCGGCAGCGGCACGAGCTCACGACGCACAGCCTCGCGCAcagcggcgccgcgccgcacgcctGCGCCGCCTGCCCGCGCGCCTTCCGCCAGCGCCGCGCGCTGCGGCACCACGTGCGGCGCGTGCACGACGCGGAACCTCCCGATATCGTCTACAACGTCACGCACTACTAG
- Protein Sequence
- MNNETEQIFLLNPAPSQSWAPSQNTGALTPLLNSQGNLDNVRDFSNVCRTCATITEFVMPIFSGDGLQNNLAEKIERHLPIQVRECDELPLVVCYQCASTLLAWHELVKCSIQADAALRAKICSNQQVSVVPKKTNPPDVTIKLRSSVEDEAQSKLFSTSVRNALVDFHIDLDEDDTDVEFVCQKCVEKPALTTVHSLAEHIRHDHSLDTLNNTVKSFITNYITFEQVLEEDSERETQSDSKEKSQIVLPSLHCPVCASVFSSATRLVYHLNKHVEVSMAAGAMCCHHVYSDKKHFVQHLQEAHVDRTADEAVPVCVSCGFTADHPEEMKQHYKGAHNDVKSVKEKNVENPNNQKYIPAVCPECNKTFSNKYNMFAHMRSHTHSAVYPCDKCNQTYRNQGNLTHHKRLAHQGILNFICVECGEPFPSRSERDIHARIHSGDTPYKCPHCGKSYRAKNTLTRHLEIHADIRKYECKICPKKSPCDLPEDLRSAPSDLSELSDDEPLATFATKKPAKLYSNFYRALMNFRDHFVSDQHHKDYPDLTDSSVSDAEENDVDRFDDLTQCNMRRDRLDEETRLELREVQNKIDNKTYYTCKICSKNLSSAHTYLFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERVRRYNCSLCTKNFANSQNLKQHLRIHTGEKPFVCSHCGKRFTQSGSLHVHLKTHSEQFPHECAECGAKFRLRSGLVRHRLKHTGERPHVCATCGKGFRQRHELTTHSLAHSGAAPHACAACPRAFRQRRALRHHVRRVHDAEPPDIVYNVTHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01230874;
- 90% Identity
- iTF_00123588;
- 80% Identity
- -