Llea025492.1
Basic Information
- Insect
- Lithophane leautieri
- Gene Symbol
- -
- Assembly
- GCA_949152455.1
- Location
- OX424487.1:5103087-5109459[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0015 0.12 13.6 0.9 1 23 5 27 5 27 0.93 2 28 0.0074 0.58 11.4 0.8 1 23 100 122 100 122 0.98 3 28 0.0014 0.11 13.7 0.2 1 23 126 148 126 148 0.95 4 28 0.01 0.79 11.0 0.3 1 23 153 176 153 176 0.95 5 28 0.0024 0.18 13.0 2.5 1 23 182 205 182 205 0.93 6 28 0.079 6.1 8.2 0.3 1 13 212 224 212 227 0.84 7 28 0.44 34 5.8 2.1 1 23 344 367 344 367 0.94 8 28 1.4 1.1e+02 4.2 0.1 2 23 392 414 391 414 0.92 9 28 0.2 16 6.9 0.1 1 23 438 460 438 460 0.93 10 28 0.00019 0.014 16.5 0.2 1 23 464 486 464 486 0.98 11 28 0.00019 0.015 16.4 0.5 1 23 491 514 491 514 0.96 12 28 0.014 1.1 10.6 0.4 2 23 521 543 521 543 0.93 13 28 0.13 10 7.5 6.5 1 23 550 573 550 573 0.96 14 28 0.0001 0.0081 17.2 4.7 2 23 580 601 579 601 0.96 15 28 0.00026 0.02 16.0 1.7 1 23 607 629 607 629 0.98 16 28 0.045 3.5 8.9 0.2 1 23 775 798 775 798 0.91 17 28 0.0077 0.6 11.4 0.3 2 23 824 845 823 845 0.96 18 28 0.12 9.1 7.7 0.1 1 21 867 887 867 888 0.96 19 28 0.27 21 6.5 0.5 1 23 930 952 930 952 0.86 20 28 0.06 4.7 8.6 0.4 2 23 980 1002 979 1002 0.93 21 28 0.0002 0.015 16.4 4.4 2 23 1026 1047 1025 1047 0.96 22 28 0.066 5.1 8.4 0.3 2 23 1051 1072 1050 1072 0.96 23 28 0.018 1.4 10.2 4.2 1 23 1077 1100 1077 1100 0.95 24 28 4.9 3.8e+02 2.6 2.8 2 23 1112 1134 1111 1134 0.90 25 28 0.5 39 5.7 0.2 1 23 1140 1163 1140 1163 0.95 26 28 4.5e-06 0.00035 21.6 1.7 2 23 1168 1189 1167 1189 0.97 27 28 0.00044 0.034 15.3 2.1 1 23 1195 1217 1195 1217 0.97 28 28 0.00077 0.06 14.5 2.7 1 23 1223 1246 1223 1246 0.97
Sequence Information
- Coding Sequence
- ATGAAAAATCTATACATTTGcttttattgccatcaacagttCTCTGACCCAGCAACATTGAGGGTACATAACATAGAACACGGTTTCCTGACGACATCGCAAGTCAAATATGCTTTGTCGAAACTGAAAAAGTATGAATTAGTCAAAGTAGATATTACTGATGTTGGTTGTAAGCTTTGCGATGAACTGATCCCAGATTTTCCGTCCTTAAAATGGCATCTGCTAGAAAAGCATAAGAAGAATTTAGATCCGAAATCCGGCGATGGTGTCCTTCCGTTCAAAGTTACAGTCAACGACTTCCCATGCACCCTCTGCTTAGAAAAATACACTGAATTCAAGTCTCTTAACCAGCATATGAACGTACATTTCCAAAACTTCATTTGTGAGCAATGTGGCACTGGTTTCATAACACCAGATCGTTTGAGGACTCACGCGTTCTCGCACGAAACAGGATCGTTTCCTTGCGATAGTTGTGACAAAGTATTTAGGTCTACTAACGCTAAAAACGAACATTACGCTACCGTACATATGAAAGTAAAAAGACATAGGTGTCCACATTGTCCTGAAGCATTCAGAAACTACTTCCAAAGAAATAAACACATATCCGCCATCCACGGTTTGAAGTTGAAAGAATTcaaatgcactatgtgtcctaAAGTTTTCACTATCAGTGGTAAACTAGGATCGGACTCCGAAATACCTGATACGAAGCGAAGAATCATCCCGTTATTCCAAGTTTCTTACGACAGAAGCTTGTGTAGACCTCTCGGGACATTAATAGACTTCAGTAGATTTCGACAAAAGAGTAATAAAGCCTTCTCTTCACCTCCAATACGAGATTTCTCTCCGTCTCGAAGTCCATCACCTGTTTATCTAGGGACTGCACCATCGCCTTTTATTGATAGTACGCCGTCATTATCCGTCCAAACTGTGAAACCGAAGGTGAAGAAAACTCCAGATATCAGGCAGAATGCACTGGCTGTATTTGAATTTTCGACAGTCTACCCATTTGTTTATGGGAGCAACAAATTCAAATGTTTCGTGTGCTCCCAACCGTTTCTGGACCTAAATGAATTGAAGCTGCATATGCATTTCTCCCATACCTTCGCTCCTCTTAAGAGACTTGTAAATAATCGAAGAGAGAATGTCTTAAAAGTAGATGTAAGTGATATAACCTGCAAGATATGTTTAGAAAAACCTCCCAACCTGGTCGAACTCAAGCGTCACCTTAAACAAGTACACGAAAAACCAATGGATTTAGAAATTCAAGACAATATGATACCGTTCAATCTCGAACTCGTAGACGATGCCTACAAATGCGTTATATGCGAACAGAGTTTCATAAAAGTGCGAATTTTAGTGATACATATGAGCGAACACTTTAATAATTATAGCTGTGAGATTTGTGGATCAGTCTTCATGACTTTACGACTCCTAAAGAAACATTTAGAAGTCCACGACTCCGGAAACTTTCCTTGCGATCGATGCAATAAAGTTTTTAGCACTCCTTATAAACGGACTTTGCATATCCGAGGCGTGCATCTAAAACAGTGTCCTAGAAGATGTCCAATGTGTCCAGAAAAGTTCAATTCGAATTACAAAAGGACAATTCATTTACAAGATGTGCATAATCAGGAGACTAGAGTACATAAATGTAAGACTTGTGGTCGAGGATTCAATCTGAAGTATCATTTGGTTTGTCACGTGCGTTCTGTCCATCTCCAGGAGAGGAACCAGCAGTGCGATGTGTGTCACCAAAGGTTTTGTAATAAAGAGTCTTTGAAACGTCATATGGTTATACATACAGGGGAGAAGAAtcataagtgtgatgtatgtggAATGGCGTTTCTGAGGAGGAAGAATTTGAAGGACCATTTGCGTTTGCATGATATTAgTATCATCCAGAAATCGAACTCCACGATCACTCTGAAAGACGAAGATGGAACAGAAATTAAACTCACAGTTCTCAAATATCCAATTCCTTTAGATGCTCTACAATACGAAGCTCAAGATATTACCGCcaaacataactttaaaaataaaagaaaaaagaaaattggcaAAACGAAAGAAATTAAGAACAACGTCAAGTTAGAAAACATATCTTTATTGAAAGAACCAGTCTCTATAAATAATGTCGATTGGAAAAACCATAATGAGCAAGAAAATTCGGTGACATTCAATGTGAAAACTGTACAAGGATATATACGTGCACCAACGAGACAACGAAGCGAAAACGTTGACTATGAAATCTGGAAACAGAATGCCTTAATCATATTTGAAAACTCTTATGTATATCCATTTGTACATGCGGGTAACAAATACAAATGCGTCATCTGCTCCAAGCCCTTCCTAGACGCTTATCTATTGAAAGACCATAGTATAAATGAACATACAATCAAAGAAATGAAACGAGCATTAAATAATAGAGTAAGAGACAAAAATCTTAAAGTCGACGTCACATATCTCCAGTGCAAGATCTGTTTACAATCACTACCTGATCTGCAGAACTTGAAAACACATTTAAAAGAGCATGGCAAGAAAATACAGCCGGATTTGCAAGATAATATAATACCTTACAAGCTAGGAGGCGAAAATTTCGAATGTCAAGTATGCGGGGAAAAGTATCTTAAACTACGGCTCCTAATTATCCATAtgaGACTGACGGCAAGACAACGAACCGGGCCCAGGACGAGTATCTGGCAAATGACCATATCAGAGAGACAAAACGCAGCAACGTTCTTAGAATATACCACCATCAAGCCTTTCTTTTACCAACAAGCTAATTTTAAATGCTTCTATTGCAATGAAGTCTTCCCAGAAATAAATTCCGTCTTGCAGCACACTGCCTTCCACGTAACTCCAGAAAGATGCTGTTTACTAAAGCAGTATCTAAGAAAAGGGAAGAGAGTCATCAAAGTAGATATATCAGGTCTCAAATGCAGGCTATGTGAACAAAAGTATTCCGATCTCGACGATATTAGAAAGCATTTAACGCTAGCACATAAGAAAGAGTTCAATTCAGCAGGAAATGGACTAATGGCGTATGATTTAAATACGAATAACGGTCAACTGACTTGCCATAAGTGTACAAAAACATTCaactctttctttcttctcAACAGACATATGAACGCGCATTTCAGTGTAGTCTGCGAGACCTGTGGCTTAGGATTTATGTCGCACCAACGCTTAATAAACCACCGAATAGTCCATCAGACAGGAGTCCACAAGTGCGATAAGTGTCAGGAAGTTTTTCCTACAAAGCTTAAACTACGTTACCATTTATTCAAGAAGCACGAAGTTACGAACGCTAAGAAGATAAAACCATTAAAATGTCCACATTGTTTAGAAAGATTTGCAGAACACTACAGAAAGATGACCCACTTAAAAGAAGTCCACGGGATTTCGTTCACATTTGAATGCAGCGCTTGTAAGGCAGTCTTGCCAACGCGAAGAGCTTTGACAGAACACACAACGAAGTTGCACACGCAAAAAATTCAATGCAAAGTCTGTGGAAAGTGTTTTGGAACAAAATCTTTGCTTAAAATGCATGTGAGGGGGCATACAGGCGAGAGAAACTTTTTCTGCGCTATTTGCCAGAAGGCGTACATGCATGAACGAACTTTAAGACAGCATATGAGAGTACATGGTCCTGTTTGGAAGTTCACGTGTTCGGAATGCGGAAACGGGTTCCATAATAGGAATGATTATAATAAGCACATGAAGCAATGGCATCCACAGTGGCAATTTAAGACTATCGTTAAAAATTTTGGAAGTGAACTTATGAATTGA
- Protein Sequence
- MKNLYICFYCHQQFSDPATLRVHNIEHGFLTTSQVKYALSKLKKYELVKVDITDVGCKLCDELIPDFPSLKWHLLEKHKKNLDPKSGDGVLPFKVTVNDFPCTLCLEKYTEFKSLNQHMNVHFQNFICEQCGTGFITPDRLRTHAFSHETGSFPCDSCDKVFRSTNAKNEHYATVHMKVKRHRCPHCPEAFRNYFQRNKHISAIHGLKLKEFKCTMCPKVFTISGKLGSDSEIPDTKRRIIPLFQVSYDRSLCRPLGTLIDFSRFRQKSNKAFSSPPIRDFSPSRSPSPVYLGTAPSPFIDSTPSLSVQTVKPKVKKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFVCSQPFLDLNELKLHMHFSHTFAPLKRLVNNRRENVLKVDVSDITCKICLEKPPNLVELKRHLKQVHEKPMDLEIQDNMIPFNLELVDDAYKCVICEQSFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDISIIQKSNSTITLKDEDGTEIKLTVLKYPIPLDALQYEAQDITAKHNFKNKRKKKIGKTKEIKNNVKLENISLLKEPVSINNVDWKNHNEQENSVTFNVKTVQGYIRAPTRQRSENVDYEIWKQNALIIFENSYVYPFVHAGNKYKCVICSKPFLDAYLLKDHSINEHTIKEMKRALNNRVRDKNLKVDVTYLQCKICLQSLPDLQNLKTHLKEHGKKIQPDLQDNIIPYKLGGENFECQVCGEKYLKLRLLIIHMRLTARQRTGPRTSIWQMTISERQNAATFLEYTTIKPFFYQQANFKCFYCNEVFPEINSVLQHTAFHVTPERCCLLKQYLRKGKRVIKVDISGLKCRLCEQKYSDLDDIRKHLTLAHKKEFNSAGNGLMAYDLNTNNGQLTCHKCTKTFNSFFLLNRHMNAHFSVVCETCGLGFMSHQRLINHRIVHQTGVHKCDKCQEVFPTKLKLRYHLFKKHEVTNAKKIKPLKCPHCLERFAEHYRKMTHLKEVHGISFTFECSACKAVLPTRRALTEHTTKLHTQKIQCKVCGKCFGTKSLLKMHVRGHTGERNFFCAICQKAYMHERTLRQHMRVHGPVWKFTCSECGNGFHNRNDYNKHMKQWHPQWQFKTIVKNFGSELMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -