Basic Information

Gene Symbol
Jarid2
Assembly
GCA_949152455.1
Location
OX424458.1:2401335-2417180[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.7e-20 1.2e-16 61.6 0.1 13 89 1002 1075 991 1075 0.90

Sequence Information

Coding Sequence
ATGGACGCTCTGACGTCGGACATACAGGAAGACGCACCCTGGTGCATGCTGTTTGCCGATGACATTGTTCTTGTCGGTGAAGATGAACCTGAGATCCAGAGCAGATTGGAGAAATGGCAGCAGAAGCTAGAGAATGTTGGCTTGAAAATCAGCAGAACCAAAACTGAGCATATGTTCTGCGATTTCGGCGGTCTCTCCAGTTCTGGAGCCATAACGCTTGATGGCGCACTTCTCCCAGTCTGCTCCGACTTTCGGGCACGTTCTCGCCGCGTCCAAGCGCAGCGCAAGTTCGCGCAGGGTGCTTACGTGCCCCCGAATGTTGTCGCCGTCGCTATTGCCGACAACCGGCGGGACGCCGCGCAAGATCCAAGAAACGTTACCATAAACAACATGACGGCTACGGGCTTATTGGACGTCGTGTCTCTACAGAGTCACTCCCATTTCTTCACTTCACAACCTGTAGTGATCGTTGAGAGGCTACGCGGCAGAATCCCGGCACGCGACGTGTCGCCCCCCTTGCAGAGCGAGATTGTTGTACCACGACACTGGGTATACCCTCCTGAAAGAGTGAATAACAATGTGGCCACAATCAAGAAACCAGCTGAGCCACCAAAGTTGCagattgttaaaaaaaagaGAGAATATAAACGAGAACATCCTATGTCGCTAAGATGTCGGCGCCCGAGCAAGCTTGAATTAAACAAGCTTATAGCGGAAAGTTGTACTCCTGTCAGAAAGATGACCATGAAGCGCAAGAAGAACTCTTCTGACGAAGATGAACCCCTCATATTCCAGAAAACTCGCCTAAAGCAGACAGCAAAACAACTGAACACTTCAAATCAGACCACTGCAAGGGAGAGTGTCCCCAAGGAGATCACTCCTAAACCGAACCCTCCCAAGGAGAAACCTCCTAAACAGAAACCTTGCAAGAAAACTAAAACTATGATCACCACAGACGAAATCATACGTAGAGTCAAGCAAAGTATAGCTTGGAATAAAACTTCCATGAAGAGGGCTCCGCAGACGAGGATACATAAGAAATGCTCTCCCAAGCAGACTGCGCAGGTCGCACCAGTAAAGTCCGTATTAGAGATTCCCGGTTTCTTAATCACCGCCATCAAGGAAGACCCCACAGTTGAAACGGTCGCTCAGGCCGATAAGGAAGACCTGGTCACCCAAGATAACTCTGTTATCTTAGGCGTCCCGAATGACCCAGTAACCCCAGAAGTCATGGATGATCTCGTTGCCCCGGGTGTCCCAGTCGCTACGGATGACCCAGTTGTTCCGCCCGTCCCGGTTAAGCAGAATGTTGAGAATGTACTGGATGGTGAGAAGGAACACTCAGGAAGTGTCCAGGTGCCTGCTGTTTTGGACGAAGTATTCGCGGGTTTAGATGAGGTGTGCGTGGAGGAGCGTATTGCTGTTCCGGAGGACGATGTCCTATTAATCAAGAGTGCCATGACGGTCGGGGATAACGTAATGGTCCAGGTAGACATGATGAATCCACCGATTACGAACCTACGAATAGCTCCTCCAGAATACAATTCTGACCCCAAAGAATACGACACGATCTACAGTGGCCACCGAATATACTTAGGAAGCCATGAACCTTTCCTTGAAGAAATAGTGCAAAATACAGCGCCCCATCTAGAGCGTGCTCGAAATGTTCAGTTCGAGGAACCTTCGACCTGCGTCGCGGCAGAGTGGCGCTCTGACCAGGACGTCATAAACGCGTCTCAGGAATTGCTGGACTCACGCTGCAAAGTGTGTAAGCCTTGCATCAGGATTGAAAAACTAATGAAAGTTTCGACTTTACTCAAATCTCAGATTGAATTAACTAGCAAGGGACAGGAAAACAATGCCGCGGTTCTAGAGAACGAACCAACGGAAAGAGAAGGTGAAACAGAAGACGGTGAAGTAGAATTAGACAACGAAGACGCGGATTCGACGAGCGACGACCAAGGTCATCTTTACTTGCTATTACCAAAACATTCTTGTGTAATGCTGAAATTAAGAACCAGCATGGTACACGGCAAAGAGGTCTTGGGGGTTCGTTTGATGCCGAGAGATGAGTCTCTGAAAAACAAACAAGAGTTCTCACTTGAAGAGCAAGAACATTTGCTCGACCAACTTATCGAGACCCTGACAATCGGTCGAGACGTCAATACAGAGGGCCAAATCGACAATACAGAGGGTCGAAGCGACAATACAGAGGGTCGAATCGACAATTTGACGGGTCGAAACGACATTCCGGAGAGTCGAAGAATAAGCATATCATCCGACAGCACAGCCGAGATGAGCGATGCTACTACTCATGATACGTCAATCCGCCTTACAGCcgagaaaagaaaacaaaagcgATTAGCTGTTAAAAAGAAGTTAGCTGAAGCGGAGCTGATGCAGGACCGCATCAGAGCGGAAAAGGAAAGAGAGATTGCCCGCCTCGAGGAAGAGAAGAGACAGGAAATATCACGGATTACGGCGGAGAAGAATATCGTTGTCGCGGAGATGTCCCGCTACCACGAGCGGTTTACCCAGATGGAAAAGGAGAAACAAAGAGATTTTGCTCGCCTCAAGGTGGAGATCAGAGCAGAAGTGATATCTAAAATAGAGGCTAATCGTCGTATGTACGCTGAAGTCGACGGCATGGCAGCGACCCTTGCCAAAGAAAAGGATGCTAAGAAAATGTATCCGGAAGAACATGCAGATCAAGATGCGCCTGGCACCAGCGGCTCCTTACTGACAACGGATGGTGGGTTGCTAGTAGACGCTCCTGTATACCACCCTACCGAAGACGATTTTTGTGATCCACTGCGCTACTATGATAAGATCTGGCCAGAAGCAGTTAGATATGGCATCTGTAAGGTGGTGCCCCCTCCTGGTTGGAAGCCACCCTTTCGAGTGCATGACGAAATGAGGTTCGATGTAACGAATCAATACATTTCGCGGCTGTTCAACCGCTGGGGACCGGCCGCGAGAGAACTTTGCGCTATCAAGTTGTCCCTCGCGCaacaaaaagttaattttaCACGTGCACCATTGCTGGATGGTGTCGAGGTAAACTTACCGAAGTTATACCACCTCGTGCAACGGCACGGCGGTCTAGAAACAGTATATAACAAGAAGCGATGGGGCAAGGTCGCAGAAGATATGAAATTTAATAAAGGACCTAATACTGAGAGGAAGCTCGACCAGATTTACGTTAAGTATCTGCTACCATACGACACGCTTTCTCATCAGGAGCGCCAAGATATTATGCGGAAAGTCGAGATCGCATGGAACCGAAAGAATCAAAAACTTTTGGACCGCGCCGTGAACCCGCTAAACCGCCAAAAGCGGTTGCTTGGCTTAATGGACTCTTCGGACGATGAAACAGAAGACGAAGACACGGTGGCCGCTGTAAATGAAGCAGAAGACTGTATCATCAAGGGCGCGGTCATGAACCGAGCTAAATTCAAAAAGATTGCAACTATGACGTACGAGAACACATTCGGACAAGGCTCGGAGGCCGTCGACCCACCCGAATTGATCAAAATCGAAGACTATTACTGGCGCCTCGTGACGCTGGGCACCGAGCACGTGTGCGTGCATACCGCGGCCATTGACACCGGCGAAGAAGGCTACGGCTTTATCAAAAATAAGTCTGACTCTTATGGACGCCATCCTTGGAATCCTAAGATAGTTAGCCAGAATCCTCGCAACGTGCTTCAGTATTTGGGTCCTGTGTTGGGCGTAACAGTGCCCACGCTGCTTCTCGGAATGCTATTCTCGACCTCCTGCTGGCACAAGGATCCACATGCAGTATCCTGGTTGGAGTACCAGCTCTTAGGCCCCGAAAGGAtttgGTACGGCATCCCAGCGCATCAGGCCGATAACTTCAGGAAAGCTGTAGAAACTCTTTGCCCGACATCTTGCCAAAACAAAGGACTGTGGCTGCCGACGGATATCACGATGATCCCGCCGAACTTGCTACGTGAGCACAACGTGACGCTGTCGCGCGTCACGCAGAGAGACGGCGAGTACATACTGGCCTTTCCAAACGCCTACACCTGCTGCATCAGCACTGGTTACACGGAATCCGAAAGTGTTTATTTCGCTCCGCCGTCCTGGCTTGAGAATCTGTGGACAGTCTTCAAGGAGGCCCGAGAAAGTTGTGAGCCGACAATGTTCGCAATGGAACATCTGCTCTACAACATAGGCAAAGACCCCAAAGCTGAGCACACTATACTGAAGATCGCCCAGCCGTTATACGACAAGATGTTGCGCGAAGAGGTCACTAACAGGCAGATGCTGCAAGAGCGGGGACTGCCGTTTTTTCAAGATTTACTGGGCACCAACACATCACGTAAGAAGAACAAAGCGAACCCATTCAACCCGCGCGGGCAAGACGAGTGTGAGTACTGCAGGGCCACCTTATACCTCTCGAAGGTAAAGGGGCTCACCGGGAGAAATACAGTTCTATGCCTCGAACACGCACTCAAATTACTTGACACTGAAAGACACAAGGACAAGGACGTAAAGCAACTCCAAGTTCTGGTACACGTGAGTGTGAAAGAACTAAACACCGTGCATGACGACATGAAGCGTCGCCTGGGCATGCCGATCACCTAA
Protein Sequence
MDALTSDIQEDAPWCMLFADDIVLVGEDEPEIQSRLEKWQQKLENVGLKISRTKTEHMFCDFGGLSSSGAITLDGALLPVCSDFRARSRRVQAQRKFAQGAYVPPNVVAVAIADNRRDAAQDPRNVTINNMTATGLLDVVSLQSHSHFFTSQPVVIVERLRGRIPARDVSPPLQSEIVVPRHWVYPPERVNNNVATIKKPAEPPKLQIVKKKREYKREHPMSLRCRRPSKLELNKLIAESCTPVRKMTMKRKKNSSDEDEPLIFQKTRLKQTAKQLNTSNQTTARESVPKEITPKPNPPKEKPPKQKPCKKTKTMITTDEIIRRVKQSIAWNKTSMKRAPQTRIHKKCSPKQTAQVAPVKSVLEIPGFLITAIKEDPTVETVAQADKEDLVTQDNSVILGVPNDPVTPEVMDDLVAPGVPVATDDPVVPPVPVKQNVENVLDGEKEHSGSVQVPAVLDEVFAGLDEVCVEERIAVPEDDVLLIKSAMTVGDNVMVQVDMMNPPITNLRIAPPEYNSDPKEYDTIYSGHRIYLGSHEPFLEEIVQNTAPHLERARNVQFEEPSTCVAAEWRSDQDVINASQELLDSRCKVCKPCIRIEKLMKVSTLLKSQIELTSKGQENNAAVLENEPTEREGETEDGEVELDNEDADSTSDDQGHLYLLLPKHSCVMLKLRTSMVHGKEVLGVRLMPRDESLKNKQEFSLEEQEHLLDQLIETLTIGRDVNTEGQIDNTEGRSDNTEGRIDNLTGRNDIPESRRISISSDSTAEMSDATTHDTSIRLTAEKRKQKRLAVKKKLAEAELMQDRIRAEKEREIARLEEEKRQEISRITAEKNIVVAEMSRYHERFTQMEKEKQRDFARLKVEIRAEVISKIEANRRMYAEVDGMAATLAKEKDAKKMYPEEHADQDAPGTSGSLLTTDGGLLVDAPVYHPTEDDFCDPLRYYDKIWPEAVRYGICKVVPPPGWKPPFRVHDEMRFDVTNQYISRLFNRWGPAARELCAIKLSLAQQKVNFTRAPLLDGVEVNLPKLYHLVQRHGGLETVYNKKRWGKVAEDMKFNKGPNTERKLDQIYVKYLLPYDTLSHQERQDIMRKVEIAWNRKNQKLLDRAVNPLNRQKRLLGLMDSSDDETEDEDTVAAVNEAEDCIIKGAVMNRAKFKKIATMTYENTFGQGSEAVDPPELIKIEDYYWRLVTLGTEHVCVHTAAIDTGEEGYGFIKNKSDSYGRHPWNPKIVSQNPRNVLQYLGPVLGVTVPTLLLGMLFSTSCWHKDPHAVSWLEYQLLGPERIWYGIPAHQADNFRKAVETLCPTSCQNKGLWLPTDITMIPPNLLREHNVTLSRVTQRDGEYILAFPNAYTCCISTGYTESESVYFAPPSWLENLWTVFKEARESCEPTMFAMEHLLYNIGKDPKAEHTILKIAQPLYDKMLREEVTNRQMLQERGLPFFQDLLGTNTSRKKNKANPFNPRGQDECEYCRATLYLSKVKGLTGRNTVLCLEHALKLLDTERHKDKDVKQLQVLVHVSVKELNTVHDDMKRRLGMPIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00907662; iTF_00906841;
90% Identity
iTF_00907662;
80% Identity
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