Lnyc005181.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- -
- Assembly
- GCA_963978505.1
- Location
- OZ021681.1:17556783-17564258[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.62 45 4.7 1.4 2 23 5 27 4 27 0.91 2 17 0.047 3.4 8.2 0.7 5 23 306 325 305 325 0.94 3 17 6 4.3e+02 1.6 0.7 2 10 382 390 382 391 0.92 4 17 0.0015 0.11 12.9 1.2 1 21 434 454 434 455 0.93 5 17 0.018 1.3 9.6 1.1 1 23 462 485 462 485 0.97 6 17 0.036 2.6 8.6 0.1 2 21 574 593 574 594 0.94 7 17 0.45 33 5.1 4.3 1 23 635 658 635 658 0.93 8 17 0.0026 0.18 12.2 0.0 1 20 693 712 693 714 0.94 9 17 0.015 1.1 9.8 0.3 1 23 721 744 721 744 0.93 10 17 0.06 4.3 7.9 0.6 2 23 755 777 754 777 0.94 11 17 1.7 1.2e+02 3.3 0.1 3 20 860 877 858 878 0.93 12 17 2.9 2.1e+02 2.6 3.0 1 23 886 908 886 908 0.96 13 17 0.16 11 6.6 0.3 3 23 919 940 918 940 0.89 14 17 2.7 1.9e+02 2.7 0.0 5 20 983 998 982 1000 0.90 15 17 0.0014 0.1 13.0 0.2 3 23 1020 1041 1019 1041 0.94 16 17 0.00015 0.01 16.1 0.4 1 23 1101 1124 1101 1124 0.97 17 17 0.00068 0.049 14.0 0.1 1 19 1200 1218 1200 1220 0.96
Sequence Information
- Coding Sequence
- ATGTACAAGCTGCAGTGCCCGGTCTGCAAACAGATGGCTGGAACAAAAACCTTTCTCCAGTCTCATCTGTTTCACTACCACAACGAATGGGCAGTGAAGAATCAAATTAATCCAAATGTATTTTCTTCAAAGTCAACGTCGGATGTGATAAAAACTCCGGCCGTCAGCGACACTCATGAAAACGATCGAGCAAACGTGGAAGCGAAGATAGCGAAATCGCCCCGGAAGATATCAGCGTCGAAACACCCGGAAGATACTTCACCCTCTTCAATGAGGGTTCCGTCTCCCGGAAGAGAGAATTTCCAGAAAGCTCGCGACGCTTCAACATCGTCTTCATTTTCCAAGCGCGCTATTGGTGTCCGTTTTGCCAAAACCCATGAAAGTCAAATCGCATTTGAAACTTTACTGGATGACATAAAGGTGGAAGCATCCGACCACGAACCGGAAGATTCGTGTGATTTCTCTATTTCCAACGGCTCGAGTGAAAACGACCGTGAGGAAATATTGAGATTGCTTCACTCCTGCAAAGAGTGTTACGTACCATTGACGAGAATAAGAGTATCGAGGACTACGGAGGAAAGAGTAAAGTCATCCGAAGAGATGGAAAACCAAAAGCAACTAAAACAGATGGAAGAGGAAAAGCTATTGGAAGAGATCGAAAAGGCGAACCAACCGGAAGAGATTGAAATAGAAAAGCCAAAAGAAAACCTGAGAAACTATTCCAACGACATTGAAGCTATATCGTTCGACGAACTGTGCTTGGAAGAGTGTCCGATAAAGTCGGAGCCGGAGGAATTCGTAGAGAGCATTGGCGAGTCTTTGGAACTGCGGAAGGAGTCATCTCCTTCTCGCGCTGAGGAAACTGGTCTACCAAAATCAAAGAAGAACCACCCGGTCGTTCGTATAGCTTCGAGAATTTGCGACAAGTATTTCCCGAGCAAGCGCGCGATGCAGCGACACTTCCGTCAACGTCACATGATAGTCGCGGACGACGTGGTGTACTGCGTGTGCGGCAAGCCGATACCCAGTCGCAGGGAGAAGGAAAAGCATTTCTACGAACACTGCGCCGAGCTTGTTACGGTGAATGCCGTCGAAACGATTCACTCGGCATTCGAGTCTTGCAGGCTATTGGAGAAGAAACGCGAGTGTCCGAAGTGTGGCGAGAAATTTTGGCTGGAAACGTGTCAACAGGATCACCAGGAACGATGCAGATCGGTTGGGACCGGTGCGAGTGTGCGACTCGCCCTAACGATGGAACTCCACAGCAGATACAACCAAACGTCTCGCAGCTCGGCGCATCACGTTTGCAATCAATGCAACACGGGATTCAATTCTTCGTCGACGCTCTGGCAACACAAACAAAAGTACTCCGGTTCCGAGAGTCATCAGTGCCCAATCTGCAAGACCTTGTTCAACGGCCGACGCTTCCTCAAAGGCCACATCCAGTCTGCCCACGAATCCAGTCGCAAGAAGCTCTATTCAATCTTTTGCGAAATCTGCAATCAGGGTTTCATGAAGAATCTCTACAAGAGGATTCACATTATGCATTGCCACTCTATCGAGATTGAGAGATCCATCGTAGGTACCGAAGTCAGCTTCGGACCATCGAGGCTCGATTCGCCGAAGATCGACAACCCCGACACGACCCGAGTCGACTCTGAAGTCCGGAAGCCGACTGCAGCGCCTCCAAGGCCTCCGAAGTCTTCCCGAGCCGAGAACAGATGCACGGTGTGCAATATCGTATTCGTGAGTCGAAAACGCTTTATCGATCACATGATTTATTACAGAAAAAGCGAGATTGTTTACTGCGGCATATGCTGCAAGGATCTCAGAGGCCAGTACGTCGCTCATCATCACAACAAAAAGTTTCATTATTCCAGGGACATGCAGAGTTCCTACACTCACCGCTGCACGATTTGCCAAGACGGTTTTATGTACAAGACCCACTTGCAGGCCCACGTCTCTCACGTTCACGGCGGTGCGTTGAGAAACTCGGCTCTCGCGTCCGACCAGGATCGGAGCGGCGCGATGAAGAGCtggaaaccggaagtcgctCGGAGCAGCGGCGGTGCGAGGCACTCGTGTCCGGTTTGCGAGATCGTCTTCCCAACGGCCGCTGCGTTGATGAATCACCAAACGCAGTATTCCAACGACGGCGACTTTGCGTGCAACCAGTGTCCAAGGAAATGTCCAACAGCGACTATGCTAGTCGACCACATCGCTCTGAACCACTCCGagggcgtcgtcgtcgacggaggAATAAAGTGCAGTCGCTGCAACGAGAACTTCGTCACCCGTGCGGGTTGGGTCGCCCATGTCAAGCACTTCCACAACAGCGACGGCGACGAACCCTCGGAGTTCTGTTTCGAAAGCaactcgacgtcgtcgagggaATTCGGAAACGTGGAGATGGAGTTGATTCCCATGAACGACTCGATATCGAGCGGCATGGCGTACATCAATTATGGAAGCTCGGTTGATTTTACGGGGCGTGAGGGCGTCAAGCCTAAGCTGGCTCTACCGGCCACTTCCGGTCCGACCAAAGGGGGTAAAACTGTCCGGAAGACCCGGACGAACTGCGACACTTGCGGGTTTGCTTGCTCTGGAACGGCTGAACTGGCCAGTCACTTGGGTTTGTGGTCGAACACCGGTTGCTATAAATGCATCGTCTGCGATAGGAGATTTTCCTGGCGAAAGTTCTTCGAGGATCACAAGAAGAAACATTTTCGACACTCGCCCGaagagataaatttttgtccaacGTGCGGCGAAGGCTTCGAAAGAATTACGGATATGAAGATGCACGAGGCTCATCTTCATCGAGTCTGCGGCGACATGGACAAGAGTAATGGACTGTTAGCTGATAAATGTCAGAAGAACAACGCTGCTGAATTAAGGCAAGAACCGAAGAAGGGCAATTTTAAATCGCACACGGAGCAGCTCCGTATTTGTAAAAAGAAGTTCCCAACAGAAAATGCACTGGACTTACATTTGACTTCCCCTGACAAACACGAGGGTGAGGGAAACTCTTCGAACAGTGGCGAGGGTCCCGCGATCTGCGATATCTGCGATATGGTATTTGTAAGTAGGAAATTATTGAGGATTCACGAgagtaaatttcattcgtcagTTGCAGCGAAACCGCCGACGCCAAAGCAACGCCCCGAAACTGGCAACCGTTTCTATGTCCTGGCCGGTGTCGACATACTTCCCGAAGTGGTCGAAGTACtgcagaaaaattttgatcgatgCAACAAAAAGCTCGGACTGCTGAATTCCATTTATCGTTACGATCCTTCATACAAGTGCGACATATGCGATATCGTCGTGTGCAGCAAGGATGCTCTGAACGTTCACCAAACGAAGATTCACACGGTGTGGTCGAACGTTTTGATCGACAGTGGAAACGGCGGAAAGCAGAGCTCAGCGGAgataatcgttgaaaaaacacTACCGTCTAGCTCCGGCTTAGGTGGAAACAAAGTGTCGACGTCAGGAGAGGGCAGGAACAAACTACCTAAGAAAACGGTGCTGCCGACATTCACCAAGAGCATTCTAAAATCTGTGTCCACGATATCCGAGACTCGAGTCACGCACTACAGATGCAAAATCTGCGATcttatttttgtaaacaaaaatttgttgcgtGTTCACAAGGTGAACGGTAACTGTGTTAAAGGTTCGGTCGAGCGAACCGACGGAAATCGTCCAGGCAAGAAGAAGACGCGCGTTACGGAGGAAATCAAAACTcagacgaaaaattcaaccgtCTCGGTTTTGCCCACGAATCGGATGCGGCTCATAAGCTTGCCACCAGGCAACTACAAAGTGGAGAAATTGAACGTACAACCGTTTCGCAAGACAGTTCAGACCTCGATAAAGCAAACTGGACACAagagaaagaatgaaattacgaaaaaccCAGCGCCTGTGGCAACAAAGCGAGTGAAGAAGatgACGAAGGATAACAAAGGATCAACTGCGAGGGAAACTGTGTACGATCGTTGCGCATATGTTGGATGCTACAATGGCAAGTTTATCAATGGCAGAAGACTCTTCCACTTTCCGGCTGAGACGGATAGGCGGCTTGAGATGTGGATTGAGAGAAGCGGAAATTTTCGGTTGCGAACTTGGGCGGCTACATCGCTCCGGAAAGCAGGGCTTTGCGGTGATcactttgatgaaaaatgttttactaaCGCAACGAGAAAGGCTTTGAGAAGAAACGTTGTGCCGAGACATTACACGGAGGATCTGAAGTACAGACAAGCGAATAACGAAATCGcggaaaataacgaaaataccaAAGAAACCACGGCtagcgaggaggacgacgatccGATGAATTGCGATCGTTTGTCACCGTTTGTCGAATCGACGGATCAAGCGAAAGAATGCGGTATCGAAATTCACGACGAGTCTTCCTTACAGTCTGCCGAGTACGTTATTGGGGATCCGCTGAAAACGGCCACGGCTGAGCGATCGCCGTCGCCGGTCgttgaatttatcgtcgaggagCTCGACGAGAGTTTCATATGTGATCAAGCAGAGGaacccgaagaaaaatcgatattcgaAGAAGAGACGGAATACGACGATTTACCAAGCCATGATGAGTACGTAACATCGCCGATGAGCATGGAAGAATCCGAAGAGGTGGTTGAACCCGTAGCGGGAGGAGCTGGTCTGAGAGTCAATCGATCGAACTCGGATGTACGAACATATTATCGTTCGAAGAATCATCGTCCAGCGAATGGTGACGAAGTGGCACAAGTAAATTTTGAACTAGCTTCTGAAGAATTGGAACCGGTCACAAACGAGGACGAATCAACGAAGCCGACATTTCCAAGCTCCAACACGGGATGCGGAAACAGAAGGCACGAGAAGATGCTGATCAATCTCCGCGAAGAGAACaaaatgttacgaaaaaaGATGCGACTTCTAAAGCAAAATCTTCGTCGGTCGAAAGCTCGAGAGGCGAATTACATGAGAGTCCGAGATATGCTGAAGGACGTAGACGAATTTCTCAATATACAGGAGTGCAACAATCCAGTTGCTCGGGCGATGGTAAAACTGGCTCTGCATAAAAACAGGAGTCCGTACACAAAGGAGGAAAAAGACTTTGCCACGCAGTTGTATCGTCATTCGGCGACCGCCGTCATTCGATTGCGAAGAGCGGGCTGTAATTTTCCGGGGAAAAACACGATTAAACGATGGATTGCCGAAGACCAAGGTGAACCACCAACATTTAACTTCTTGACTGCGGACGGAAATGACGATGCTGGCGAGGACGCGGGCATCGACATGGATGACATTGATGATGATGTGGTGGAAACGGTCGACACCGTAAATGAACCAGCAGATAATATTGATGAAGTGGTCGAAGACGCGGAGGTGGTGATCAACGATTTGGTCGAACACTTGGAAGAAGTGGTCGatgaagaagaacaagaataCGTACACGTCCTCCCAATCAATTTCAAATAG
- Protein Sequence
- MYKLQCPVCKQMAGTKTFLQSHLFHYHNEWAVKNQINPNVFSSKSTSDVIKTPAVSDTHENDRANVEAKIAKSPRKISASKHPEDTSPSSMRVPSPGRENFQKARDASTSSSFSKRAIGVRFAKTHESQIAFETLLDDIKVEASDHEPEDSCDFSISNGSSENDREEILRLLHSCKECYVPLTRIRVSRTTEERVKSSEEMENQKQLKQMEEEKLLEEIEKANQPEEIEIEKPKENLRNYSNDIEAISFDELCLEECPIKSEPEEFVESIGESLELRKESSPSRAEETGLPKSKKNHPVVRIASRICDKYFPSKRAMQRHFRQRHMIVADDVVYCVCGKPIPSRREKEKHFYEHCAELVTVNAVETIHSAFESCRLLEKKRECPKCGEKFWLETCQQDHQERCRSVGTGASVRLALTMELHSRYNQTSRSSAHHVCNQCNTGFNSSSTLWQHKQKYSGSESHQCPICKTLFNGRRFLKGHIQSAHESSRKKLYSIFCEICNQGFMKNLYKRIHIMHCHSIEIERSIVGTEVSFGPSRLDSPKIDNPDTTRVDSEVRKPTAAPPRPPKSSRAENRCTVCNIVFVSRKRFIDHMIYYRKSEIVYCGICCKDLRGQYVAHHHNKKFHYSRDMQSSYTHRCTICQDGFMYKTHLQAHVSHVHGGALRNSALASDQDRSGAMKSWKPEVARSSGGARHSCPVCEIVFPTAAALMNHQTQYSNDGDFACNQCPRKCPTATMLVDHIALNHSEGVVVDGGIKCSRCNENFVTRAGWVAHVKHFHNSDGDEPSEFCFESNSTSSREFGNVEMELIPMNDSISSGMAYINYGSSVDFTGREGVKPKLALPATSGPTKGGKTVRKTRTNCDTCGFACSGTAELASHLGLWSNTGCYKCIVCDRRFSWRKFFEDHKKKHFRHSPEEINFCPTCGEGFERITDMKMHEAHLHRVCGDMDKSNGLLADKCQKNNAAELRQEPKKGNFKSHTEQLRICKKKFPTENALDLHLTSPDKHEGEGNSSNSGEGPAICDICDMVFVSRKLLRIHESKFHSSVAAKPPTPKQRPETGNRFYVLAGVDILPEVVEVLQKNFDRCNKKLGLLNSIYRYDPSYKCDICDIVVCSKDALNVHQTKIHTVWSNVLIDSGNGGKQSSAEIIVEKTLPSSSGLGGNKVSTSGEGRNKLPKKTVLPTFTKSILKSVSTISETRVTHYRCKICDLIFVNKNLLRVHKVNGNCVKGSVERTDGNRPGKKKTRVTEEIKTQTKNSTVSVLPTNRMRLISLPPGNYKVEKLNVQPFRKTVQTSIKQTGHKRKNEITKNPAPVATKRVKKMTKDNKGSTARETVYDRCAYVGCYNGKFINGRRLFHFPAETDRRLEMWIERSGNFRLRTWAATSLRKAGLCGDHFDEKCFTNATRKALRRNVVPRHYTEDLKYRQANNEIAENNENTKETTASEEDDDPMNCDRLSPFVESTDQAKECGIEIHDESSLQSAEYVIGDPLKTATAERSPSPVVEFIVEELDESFICDQAEEPEEKSIFEEETEYDDLPSHDEYVTSPMSMEESEEVVEPVAGGAGLRVNRSNSDVRTYYRSKNHRPANGDEVAQVNFELASEELEPVTNEDESTKPTFPSSNTGCGNRRHEKMLINLREENKMLRKKMRLLKQNLRRSKAREANYMRVRDMLKDVDEFLNIQECNNPVARAMVKLALHKNRSPYTKEEKDFATQLYRHSATAVIRLRRAGCNFPGKNTIKRWIAEDQGEPPTFNFLTADGNDDAGEDAGIDMDDIDDDVVETVDTVNEPADNIDEVVEDAEVVINDLVEHLEEVVDEEEQEYVHVLPINFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -