Basic Information

Insect: Listrodromus nycthemerus
Gene Symbol: -
Assembly: GCA_963978505.1
Location: OZ021688.1:4809547-4817818[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.064 4.6 7.8 4.3 1 23 418 440 418 440 0.98

2 19 0.00017 0.012 15.9 0.8 2 19 476 493 475 497 0.90

3 19 0.0036 0.26 11.7 5.4 1 23 503 525 503 525 0.98

4 19 0.0012 0.084 13.3 0.1 3 23 533 554 531 554 0.92

5 19 3.2 2.3e+02 2.5 1.2 1 23 561 584 561 584 0.97

6 19 0.00016 0.011 16.0 1.2 1 23 588 610 588 610 0.97

7 19 0.0021 0.15 12.5 0.5 1 23 616 638 616 638 0.98

8 19 6.5e-05 0.0047 17.2 2.0 1 23 644 666 644 666 0.96

9 19 0.00012 0.0085 16.4 0.3 1 19 671 689 671 691 0.93

10 19 1.5 1.1e+02 3.5 0.7 3 20 1103 1120 1101 1123 0.91

11 19 1.3 90 3.7 1.5 1 23 1129 1152 1129 1152 0.97

12 19 0.00014 0.0097 16.2 0.1 1 23 1158 1180 1158 1180 0.98

13 19 0.99 71 4.1 1.9 1 23 1186 1208 1186 1208 0.97

14 19 0.00013 0.0096 16.2 0.6 2 23 1215 1236 1214 1236 0.96

15 19 0.74 53 4.5 1.8 3 23 1245 1266 1244 1266 0.92

16 19 2.6e-05 0.0019 18.5 1.6 1 23 1270 1292 1270 1292 0.98

17 19 0.099 7.1 7.2 2.9 1 23 1297 1319 1297 1319 0.98

18 19 6.7e-08 4.8e-06 26.6 0.3 1 23 1325 1347 1325 1347 0.98

19 19 0.0008 0.057 13.8 1.1 1 21 1352 1372 1352 1373 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.064	4.6	7.8	4.3	1	23	418	440	418	440	0.98
2	19	0.00017	0.012	15.9	0.8	2	19	476	493	475	497	0.90
3	19	0.0036	0.26	11.7	5.4	1	23	503	525	503	525	0.98
4	19	0.0012	0.084	13.3	0.1	3	23	533	554	531	554	0.92
5	19	3.2	2.3e+02	2.5	1.2	1	23	561	584	561	584	0.97
6	19	0.00016	0.011	16.0	1.2	1	23	588	610	588	610	0.97
7	19	0.0021	0.15	12.5	0.5	1	23	616	638	616	638	0.98
8	19	6.5e-05	0.0047	17.2	2.0	1	23	644	666	644	666	0.96
9	19	0.00012	0.0085	16.4	0.3	1	19	671	689	671	691	0.93
10	19	1.5	1.1e+02	3.5	0.7	3	20	1103	1120	1101	1123	0.91
11	19	1.3	90	3.7	1.5	1	23	1129	1152	1129	1152	0.97
12	19	0.00014	0.0097	16.2	0.1	1	23	1158	1180	1158	1180	0.98
13	19	0.99	71	4.1	1.9	1	23	1186	1208	1186	1208	0.97
14	19	0.00013	0.0096	16.2	0.6	2	23	1215	1236	1214	1236	0.96
15	19	0.74	53	4.5	1.8	3	23	1245	1266	1244	1266	0.92
16	19	2.6e-05	0.0019	18.5	1.6	1	23	1270	1292	1270	1292	0.98
17	19	0.099	7.1	7.2	2.9	1	23	1297	1319	1297	1319	0.98
18	19	6.7e-08	4.8e-06	26.6	0.3	1	23	1325	1347	1325	1347	0.98
19	19	0.0008	0.057	13.8	1.1	1	21	1352	1372	1352	1373	0.92

Sequence Information

Coding Sequence: ATGGAGATGAAACTGGAGGAGGCTCAAGTCTGCAGACTGTGCGGACAATGCGAGAGCATATTCATCGACGTATTCGGCGAGGAGGGAACAAAACGATTTCTCGGACTCAAAATACACACCAAAGTCAACATTgtgATAGATGAGGAGGACCCTCTGCCCAAGGCGATCTGTGTACAATGCCTCGGCAAGCTCGAATTCGTTTGCGACTTTCAAGAGGAGTGTCTCCGCACCCAACAAGAGTTGCGCGATCGTTACAATCTTCCGCCGTTGACTGACTCTGACGAGATAAAGGCCGAGGAGCGTTCGGCGGCGGCCGGTGCCTCGAtgaacaacaacagcagcgacAAGAATTTGAATCCCCCGCCAGCGACACAGCCAGAGATTGAGTCCGAGCCAGCACCAACGTCAGCAACGACAATAACCACAGCAACTTACGATAGGCCAGAATCCGATGCCAGTTCAACGACTCCAAAGCCGCGAAGAAAGCTCCGACCAATCAGGCGCTCGCGTTCaccgagcgagaacgagaagagtGATAACAGCGCCACGACTCGGGAACCGACCGAAGCCTCGGGCAAACGTTGGCTGCGTAGCCGCAACTCGCCAGCGGCCGCAGCGCCTCCGGTCAACCAATCACGTGCAAGCAGCGCTTCGATCGCCAGTAGACTGCGAAGCCAGGGGGATTCCccggagaataaagaagatCCGAATGACGATGTGTCTCAAGCCGGCTCGAAGTCTTCGACACCGCGCTGTCCGGAAAAACCTCCGGAAGATACCGCAATGATCCAAATTCCAACGTCCGCCTTAAACAAAGTCCTGACGGTCGTCTCGTCGTCCCCGGACATGGAAGTCTCGGTAAAAGAATCCACGAATCGAACCGGCGACACGGAAGACATAAGTTTCACTCTCGAGCTCAGGCGCAAGAAGCGCGACACCGAATTCGTGACCGTCCTAGCGAAAGTCTTTCCCGACCAGGGTTCCTGTCTCGTCGGTTCAGGAATCGTTGCTCTGCTTGAGAACGAGAGCAACGCTGAGATCGACAAGATCGTGAGCACGATAGCGAACGGAAGCAGTGGGAAGAGCGGTCGAGAAAACACCACGAACGGAATAACGAAGATCGATGAGCTCGAGGAGATGGAGAAGCGATTGAGCTCCAGTCAGAATCCCGAAGAGCTCTTTCGAGTCGACGGCGAGGAGATTCGAGTCGACGACAACGTCGAACAGGTCACCGTCGATAATCAGACCGGTTACTCTTGCAAACTATGCAGAAAGGTTTACGAACGAAGGGACAAGTGCACCGTCCACGTCAAGACCCACCTGGGAATAAAGCAGTACGCTTGCACGCTGTGCTGCGCAAAGTTTGTCTGCAAGTCGGACGTAATGAAGCACATAAGGTGCTCGCACACGAATCCGAGACCGATGCAGTGTCCCAAGTGCCCGAAGAGGTTCAGATCGAAGTTTGACCTCACCGAACACGACAATGTCCACAAAGGGGTGAAACCTTACAGATGCACCGACTGCTCGCAATCCTACCATCACAAAGTTTCTCTGCAGATGCACGTAAAGTCTCATCTACCGCCCCAGAATCTGGCGTGCGAGTACTGCGGCAAAGTCTTTCCATTCCGTACAAGGCTACTCTCGCACATCGGAAGCGTTCACCTGAAGAATCGTAGAAACTTTCGATGTCGCTTCTGTTACAATCTTTACTCCAGCTTGGCGGTTCTCAACGACCATGTAAAGACTCGCCACGCTACAACTTACACATGCGAGACTTGCTCGAAAACCTTCAAGGTGGCCTCGAAGTACAAAGCTCACGTTCTCCAGCACTCGAATCCGAAGCCCTTCGTGTGCAACGTATGCAACAATCGTTACGCCTCGAAAGCCTTTTTGAACGAACACCTGCTGAAACACGAGGGTTTGAGAAAACACATTTGCCAGAAATGTGGCGCTAGCTTTGCCCAGGCGAGCCATCTCGCAGCGCATCGTCATGTTCATGGCGAAAAGACTCACGCATGTCCAGAGTGCGGAAGGAAGTTTAATCGGAGGGACAACATGAAGATCCACGAGACCGACGGACTTTCCCACTTCGTCTGCATGCGATGCATCGGTACCCTGGAGTTCATCGATGAGTTTCAACAGAATTGCCAGAAAACCCAACAAAATTTCGTCGCTGCAaagaagcTGCAGAAATGTCCGAGGATAAAAGTGTCTTCACCATCGTCCGGAGCTAGATTGGACGATCCTGAGTCCGACAAGGAGAACGCCTCGCCGATCCTCACCCCAAGCCGGAAGAGGAAACGTCCGgcgtcgacgatcgatgaCTCAAAAATCCTGAAGCCTCTGGCGCTCTCGACGAACCGGAGCTTGACGATCAACATCAACGAGTCCGATAGAATAATAGCTGAGAAATCTCTAACCAAGAGcgacaagaagaaaaatccacTCGCGTCCAACAATCCGGCGTCTTCGTCAAGCACCAAAGgaAATAAAGTCTCTGAGAAGCCAGCTCGTTCAGCGAGCACGGACGACGACACGAAAAATGAGTTACAAGAAGCCAAGATTGGGCTTGGCGCGAATCCTCGAGAAATTTCCAAAGGATCTCCGAGCAAAGTCAGAACAACGTTCGAGTCGTCGACTCTCAAGCCGATCGGTTTTGTCGTCAAGTTGGAGAAAACCGAGAGTTCGGAAAGTCAAGATAAATCGAACGAGTCCGATTCGATACCGATCGAGCGTGTGAAGCTTCCCGAGGCGGAGAGACCGAAAGCCTCGAGAGCCGAGAAACACCACGACGAGTGTCCGATCGCAGGCGACGAGGCCGGCAAGCTCGTGGAAAAAAGCCCGGAATCCTCGGCGTCGAGAGCGACGACACTGAAGGACGATAAATCGGCAAATTCACCGTCGAAAGTTGTCGACGAGAGCGTGACGAAGTCGAGAGCGGACGGTCAGGCGACTCCGAGATCGAAGATCGTCGTCACGAATTTCAGGAGAACGGAGCCGGAAATtagcggcgaaaaaaattcggcgaaaTCGTCGGTCGACAGAAACGTCGTGAAGTTCGAGTCGAGCCCGACGATTGTAGAACGCAGGGAGGTGAGAAAGTCGCGAACGATCGGGAATAATTACGCCGGGGATgcgaacgacgaggacgacgaggaatcgagaaaaaaatttggcaaaaTATCCGACCTGATGACAACGGAGCAGAAGGACACTGTTGAGAAATTTTACACGCTGGACATGTCGACGGTCGACGAGGAGGTCGTCGGCGAGAAGATCGTCTTCCTCGACAGCCGAACGTACGGCTGCAAGATCTGCAAGGCCGCTTATTCGAGACAGGACAAATGCCAGGTTCACATATGGGGTCATCTCGGTATGCGACCGTATCGATGCAATGCGTGCGACTTTGCGACTGTTACGGTGAGCAACATACGTTGTCACATAAGGAAGAGCCATCTAAAGATAAAGCCTTACGCGTGCGAGCTGTGCGAGAAGCGTTACGTCACGGCTTTTCTTCTTGAGGAGCACATGAACAGCCACACCGGCTCGAGACCTTACAGCTGCAATCTGTGCAAATTCACGAGCGCCAGCAGGCAAGTTTTGAGCTATCACAAGTCGACTCACAAGTCCGTCAAGgACATAACGTGTCACGTTTGCGGCAAGGAGTTTTACTCGAAGGGAAGAATGCGGGCTCACATGGTGATACACAATAAGGACAAGGCGGCGAATATGTGCAAGCTATGCTCGATATATCTTTGCaacagcgaggccctggagagACATCACGCTAACGTTCACTCGCAGGATTACGTCTGCAACGTTTGCGGTAAACGCTGCAAGTCGAAGAAAGCTCTCGGCAATCATCAAAACgTACATTCTGCGGCGAAGTACAAATGCACTCTGTGCTCCAACGTCTACAAGAGCAGTCACATTCTCAAGGAACACTTGCTGAAGCACAAGGGCATAAGGAAGTACAAGTGTAACGTGTGTGGCAAGGATTTCGCACAGCAGTCCCATCTCGCCGCTCACATGGCCGTACACAGCGAAAAAAGGTTTTTATGTCCGGGCTGCAATCGTCCCTTCAATCGACACGACAACATGAAGATGCACACGAAACGCTGCGAGGCCTTTCTCGCCAATCCGGAGCTTAGCAGTCTTCTGACGATACGAAGGAGTAGAAGCAAACCGGCCGACGAGTCTCGGATTGGCGCCGATCTCGATGAATCGACGGAAATCGAACGACCCGGCGAAATTCCGACCGAGCCGGAAAATTTCGCACCGAATTCGCAGGGCCAGATCAAGCTACTCGCCGTCGGTGGGCCGAACGACGAAACAGTGCAGATCGAAGACCTGACCATGATAATTGGAAACACGATCGTTATTCCGTGCACGTGA
Protein Sequence: MEMKLEEAQVCRLCGQCESIFIDVFGEEGTKRFLGLKIHTKVNIVIDEEDPLPKAICVQCLGKLEFVCDFQEECLRTQQELRDRYNLPPLTDSDEIKAEERSAAAGASMNNNSSDKNLNPPPATQPEIESEPAPTSATTITTATYDRPESDASSTTPKPRRKLRPIRRSRSPSENEKSDNSATTREPTEASGKRWLRSRNSPAAAAPPVNQSRASSASIASRLRSQGDSPENKEDPNDDVSQAGSKSSTPRCPEKPPEDTAMIQIPTSALNKVLTVVSSSPDMEVSVKESTNRTGDTEDISFTLELRRKKRDTEFVTVLAKVFPDQGSCLVGSGIVALLENESNAEIDKIVSTIANGSSGKSGRENTTNGITKIDELEEMEKRLSSSQNPEELFRVDGEEIRVDDNVEQVTVDNQTGYSCKLCRKVYERRDKCTVHVKTHLGIKQYACTLCCAKFVCKSDVMKHIRCSHTNPRPMQCPKCPKRFRSKFDLTEHDNVHKGVKPYRCTDCSQSYHHKVSLQMHVKSHLPPQNLACEYCGKVFPFRTRLLSHIGSVHLKNRRNFRCRFCYNLYSSLAVLNDHVKTRHATTYTCETCSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGASFAQASHLAAHRHVHGEKTHACPECGRKFNRRDNMKIHETDGLSHFVCMRCIGTLEFIDEFQQNCQKTQQNFVAAKKLQKCPRIKVSSPSSGARLDDPESDKENASPILTPSRKRKRPASTIDDSKILKPLALSTNRSLTININESDRIIAEKSLTKSDKKKNPLASNNPASSSSTKGNKVSEKPARSASTDDDTKNELQEAKIGLGANPREISKGSPSKVRTTFESSTLKPIGFVVKLEKTESSESQDKSNESDSIPIERVKLPEAERPKASRAEKHHDECPIAGDEAGKLVEKSPESSASRATTLKDDKSANSPSKVVDESVTKSRADGQATPRSKIVVTNFRRTEPEISGEKNSAKSSVDRNVVKFESSPTIVERREVRKSRTIGNNYAGDANDEDDEESRKKFGKISDLMTTEQKDTVEKFYTLDMSTVDEEVVGEKIVFLDSRTYGCKICKAAYSRQDKCQVHIWGHLGMRPYRCNACDFATVTVSNIRCHIRKSHLKIKPYACELCEKRYVTAFLLEEHMNSHTGSRPYSCNLCKFTSASRQVLSYHKSTHKSVKDITCHVCGKEFYSKGRMRAHMVIHNKDKAANMCKLCSIYLCNSEALERHHANVHSQDYVCNVCGKRCKSKKALGNHQNVHSAAKYKCTLCSNVYKSSHILKEHLLKHKGIRKYKCNVCGKDFAQQSHLAAHMAVHSEKRFLCPGCNRPFNRHDNMKMHTKRCEAFLANPELSSLLTIRRSRSKPADESRIGADLDESTEIERPGEIPTEPENFAPNSQGQIKLLAVGGPNDETVQIEDLTMIIGNTIVIPCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -