Basic Information

Insect: Listrodromus nycthemerus
Gene Symbol: -
Assembly: GCA_963978505.1
Location: OZ021682.1:12053759-12058061[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0001 0.0072 16.6 2.8 1 21 22 42 22 43 0.96

2 15 0.00043 0.031 14.7 0.6 1 22 67 88 67 88 0.95

3 15 0.00035 0.025 14.9 1.7 1 23 96 119 96 119 0.98

4 15 0.00073 0.053 13.9 1.3 1 20 142 161 142 163 0.94

5 15 0.024 1.7 9.2 2.3 1 21 182 202 182 203 0.95

6 15 0.00014 0.01 16.1 0.6 1 21 246 266 246 267 0.95

7 15 0.011 0.81 10.2 2.5 2 23 274 295 274 296 0.95

8 15 0.39 28 5.3 0.6 1 19 403 421 403 423 0.96

9 15 0.00023 0.016 15.5 1.6 1 23 432 455 432 455 0.98

10 15 0.00074 0.053 13.9 0.4 1 21 487 507 487 508 0.96

11 15 0.00098 0.07 13.5 4.2 1 23 516 539 516 539 0.98

12 15 0.00026 0.019 15.3 0.7 1 21 560 580 560 581 0.95

13 15 0.00013 0.0094 16.3 2.3 1 23 589 612 589 612 0.97

14 15 0.0023 0.17 12.4 0.2 1 21 665 685 665 686 0.95

15 15 1.9e-05 0.0013 18.9 2.7 1 23 694 717 694 717 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0001	0.0072	16.6	2.8	1	21	22	42	22	43	0.96
2	15	0.00043	0.031	14.7	0.6	1	22	67	88	67	88	0.95
3	15	0.00035	0.025	14.9	1.7	1	23	96	119	96	119	0.98
4	15	0.00073	0.053	13.9	1.3	1	20	142	161	142	163	0.94
5	15	0.024	1.7	9.2	2.3	1	21	182	202	182	203	0.95
6	15	0.00014	0.01	16.1	0.6	1	21	246	266	246	267	0.95
7	15	0.011	0.81	10.2	2.5	2	23	274	295	274	296	0.95
8	15	0.39	28	5.3	0.6	1	19	403	421	403	423	0.96
9	15	0.00023	0.016	15.5	1.6	1	23	432	455	432	455	0.98
10	15	0.00074	0.053	13.9	0.4	1	21	487	507	487	508	0.96
11	15	0.00098	0.07	13.5	4.2	1	23	516	539	516	539	0.98
12	15	0.00026	0.019	15.3	0.7	1	21	560	580	560	581	0.95
13	15	0.00013	0.0094	16.3	2.3	1	23	589	612	589	612	0.97
14	15	0.0023	0.17	12.4	0.2	1	21	665	685	665	686	0.95
15	15	1.9e-05	0.0013	18.9	2.7	1	23	694	717	694	717	0.98

Sequence Information

Coding Sequence: aTGGAGAATCTCGGCCCGTTTACAGCATCGTTTTCGGAGGAGGGAAAAGATGCGCCGACCGAGTACCGTTGCGATTTCTGCAATTGTCCGTACTCCTCGCAGGGACATCTCAAGCGTCACATAAACATGGGCTGCTTCATGGACCCTTCGTTCTCGGTCGAGGCGAGGCGCAGCCTCAATGTCATGGAGTCCAGGAACCACGTCTGCCCGAGGTGTTCCCAGGGTTACAAGAACAAGAGGACGCTGAACGCTCATCTCCGAATGGCGTGCGGTAGAGAGCCCAAGTTCCGTTGTCCGTACTGCGGCCTCAAGAGCAAACATCCACCAAATATCTACACTCATATCAGGAGACGACACAAGGGGATGGACGCTTGCCTGATTGTCGATCAAGAGAGGCTCGTGGCGACAGACCCCAAGAGAAGTTACACCTGCAGATACTGCACCAAGACTTTCATGCAGATTGGTCATCTTCGAAGTCACGTGACGAGCTCGTGCTACTGGAATCCCTCAGCGACTTGCCATCAGTCGCCGAGGACACGAGCGCACTCCTGCGCTCAGTGTGGCTCGAGTTACATGAAGCAATCGCATTTGGTCTATCACATTCGTCATGAATGCGGAAGAACGCAGAAGTGCTTTCGTTGCGATTCGATGTGTCTCTTCGATTACTCACCGAGGCCTCGTCGTCACTCGACGATGGAGCAACAGCATCAGCAGCCGAAACGAATTAAATCCTCGTTCGCTTGTTCCAATTGCGACGTCAGCTTCAGCACCAAAGCCTCGCTCACCTATCACGTTCGTCACAATTGCGGGAAGATGCGACAATGTGTCTACTGTGGAAGTGTCTACAAGAGACTACAAGACATGAAGTTACATTTCAGACGACACCACGACAACCTTCCTTTTCAAGTTACCATGTTTCCGATTCTTCGCACGAGGCAAACGTATGGCTTGGCTCAGCAATTTCCAGCCTCGTCCTCGATTTCGTTCGTATCTCGGACAACTCATCAGCCGAGAATCCTCCAACCGAGAGGCGAGCATCCTCGCGGCACGAGGAGGACTATCGTCAGAAACAAAGTCGACTCTTATCAGTATGTTGCACGTGGTTATCGCGGTGAGGCGACTACGAGCTCCGGCATGACGACTTACTGGGGACAGTACCAGCGTGCCATGAGAACCCAGGAGGCTACCTCTTCGACGCGAAAGAAGTTTCATTGCCCCCGATGCAACAGCGGATACACGAGACTTGCGGACATGAAGACCCACTGCCAGTTTCAGTGTGGAAAAGAGCCTCGCTATCAGTGTCCTTACTGCACGAAAAAAgcgaaattctcgtcgaacATGTACGTCCACGTTCGGAGAATGCACAAGGAAGAGAAGCTTCTGATAATCGATCTGCACAAACAGCTGTCGACGGATCATCAGTCGTGCAACGTTGGCTTGATAGCGAATCCCGAGAGATACCCGTGCACCAACTGCAGCAGCGTCTTTGGTCAGAAACGGAGCCTGATGACTCACATGAGGTACGAGTGTGGACAACCGCCTAGATTCAAGTGTCCCTACTGCGAGCTTACCTCGAAGAAAACATCGAACGTCCACAAACACATAAGGAGGAAACATGacagtGTAATGGATCCACTATGGCTGAAGCCCCGTCGTTTGTGCCGTGGCCAGAAGGTCTTCCAGTGTCCCAACTGTAGCAGCTCGTACAGCAGGAAACCAGACCTGACGAAGCATCGAATGTACGAGTGCGGACAACCACCAAGATTCAAGTGTCCTTACTGCGATCTTAAATCGAAGAAGACGTCGAACGTCAACAAGCACATAAGAAACAAGCACAAAGGCCACGCGGTTTACATACTCGACATATTTAGATCGCACGATCAAGCTATTGGTGttcaaattcgaaaaaaaaaatgttctctttaCTTTGCAGAAATCTACGTGAATTCACCGACGTTAGACTCTTTCGCGAGACGCGACGAGCGCAAGGTGTATCCTTGTCCAAACTGCAACAGCGTCTACAATCTGAAGGGTACACTAACGAGGCATCAAATGTACGAGTGCGGTCAGCTGCCGAGATTCAAGTGCCCTTACTGCGACTATCGGGCCAAACAAAAATCCAACACTCGTACCCACATTCGAACTCGTCACGTTGGCCACGTCATATGCGTTATCGATCTCGCCGACAAATCTTACGAGGAATTGGGCGATAGCTAA
Protein Sequence: MENLGPFTASFSEEGKDAPTEYRCDFCNCPYSSQGHLKRHINMGCFMDPSFSVEARRSLNVMESRNHVCPRCSQGYKNKRTLNAHLRMACGREPKFRCPYCGLKSKHPPNIYTHIRRRHKGMDACLIVDQERLVATDPKRSYTCRYCTKTFMQIGHLRSHVTSSCYWNPSATCHQSPRTRAHSCAQCGSSYMKQSHLVYHIRHECGRTQKCFRCDSMCLFDYSPRPRRHSTMEQQHQQPKRIKSSFACSNCDVSFSTKASLTYHVRHNCGKMRQCVYCGSVYKRLQDMKLHFRRHHDNLPFQVTMFPILRTRQTYGLAQQFPASSSISFVSRTTHQPRILQPRGEHPRGTRRTIVRNKVDSYQYVARGYRGEATTSSGMTTYWGQYQRAMRTQEATSSTRKKFHCPRCNSGYTRLADMKTHCQFQCGKEPRYQCPYCTKKAKFSSNMYVHVRRMHKEEKLLIIDLHKQLSTDHQSCNVGLIANPERYPCTNCSSVFGQKRSLMTHMRYECGQPPRFKCPYCELTSKKTSNVHKHIRRKHDSVMDPLWLKPRRLCRGQKVFQCPNCSSSYSRKPDLTKHRMYECGQPPRFKCPYCDLKSKKTSNVNKHIRNKHKGHAVYILDIFRSHDQAIGVQIRKKKCSLYFAEIYVNSPTLDSFARRDERKVYPCPNCNSVYNLKGTLTRHQMYECGQLPRFKCPYCDYRAKQKSNTRTHIRTRHVGHVICVIDLADKSYEELGDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -