Basic Information

Insect: Listrodromus nycthemerus
Gene Symbol: -
Assembly: GCA_963978505.1
Location: OZ021686.1:8908661-8917767[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.6e-05 0.0033 17.7 1.3 1 23 451 473 451 473 0.96

2 18 1.9e-05 0.0013 18.9 1.9 1 20 479 498 479 501 0.94

3 18 3.1e-05 0.0022 18.3 0.7 1 23 507 529 507 529 0.98

4 18 7.6e-05 0.0054 17.0 4.4 1 21 535 555 535 557 0.95

5 18 2.3e-05 0.0017 18.6 4.6 1 23 563 585 563 585 0.99

6 18 2.3e-05 0.0017 18.6 5.3 1 23 591 613 591 613 0.97

7 18 8.9e-06 0.00064 19.9 7.1 1 23 619 641 619 641 0.97

8 18 8.7e-08 6.2e-06 26.3 2.7 1 23 647 669 647 669 0.98

9 18 6.4e-05 0.0046 17.3 6.7 1 23 675 697 675 697 0.97

10 18 7.7e-06 0.00055 20.1 5.8 1 23 703 725 703 725 0.98

11 18 5.3e-07 3.8e-05 23.8 2.9 1 23 731 753 731 753 0.98

12 18 7.9e-06 0.00057 20.1 7.8 1 23 759 781 759 781 0.98

13 18 2.5e-05 0.0018 18.6 9.1 1 23 787 809 787 809 0.98

14 18 3.2e-05 0.0023 18.2 7.5 1 23 815 837 815 837 0.98

15 18 0.00061 0.044 14.2 8.9 1 21 843 863 843 865 0.94

16 18 1.2e-05 0.00086 19.6 0.4 1 23 871 893 871 893 0.98

17 18 0.028 2 8.9 4.5 1 23 903 925 903 925 0.98

18 18 3e-07 2.1e-05 24.6 1.5 1 23 931 953 931 953 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.6e-05	0.0033	17.7	1.3	1	23	451	473	451	473	0.96
2	18	1.9e-05	0.0013	18.9	1.9	1	20	479	498	479	501	0.94
3	18	3.1e-05	0.0022	18.3	0.7	1	23	507	529	507	529	0.98
4	18	7.6e-05	0.0054	17.0	4.4	1	21	535	555	535	557	0.95
5	18	2.3e-05	0.0017	18.6	4.6	1	23	563	585	563	585	0.99
6	18	2.3e-05	0.0017	18.6	5.3	1	23	591	613	591	613	0.97
7	18	8.9e-06	0.00064	19.9	7.1	1	23	619	641	619	641	0.97
8	18	8.7e-08	6.2e-06	26.3	2.7	1	23	647	669	647	669	0.98
9	18	6.4e-05	0.0046	17.3	6.7	1	23	675	697	675	697	0.97
10	18	7.7e-06	0.00055	20.1	5.8	1	23	703	725	703	725	0.98
11	18	5.3e-07	3.8e-05	23.8	2.9	1	23	731	753	731	753	0.98
12	18	7.9e-06	0.00057	20.1	7.8	1	23	759	781	759	781	0.98
13	18	2.5e-05	0.0018	18.6	9.1	1	23	787	809	787	809	0.98
14	18	3.2e-05	0.0023	18.2	7.5	1	23	815	837	815	837	0.98
15	18	0.00061	0.044	14.2	8.9	1	21	843	863	843	865	0.94
16	18	1.2e-05	0.00086	19.6	0.4	1	23	871	893	871	893	0.98
17	18	0.028	2	8.9	4.5	1	23	903	925	903	925	0.98
18	18	3e-07	2.1e-05	24.6	1.5	1	23	931	953	931	953	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAACAGCATGCTTTGCCAGCAACGACGCAGGCCCAGCAAGAGGAAGTAAACTCTGGTCAGAGCTGTCGTCCTTCGTACCCGGGGAGTTTGGCTAGTTCGTCTAGTGTCGGCCAAGTAGGAAGTAGCCCGCATACGTCCGCTGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTATTTCCCGGACCGATACCTCAGGTGTATCCGCACCATCCGCACTCCTCCCAGAGGAGCGGCGGAAGTGGCGATACAATCGCCAAGGATTCAACTGCGAGCTCGTTGTCCCAGGAGATGGCGCTGACCTCCGGCGCGCATCATCAGACACCGTCTTCGCATCATCACCACCAGACTACCGTTACCGCTGGAAACAGCAACAGCATCAGCAACAATCATCACGGCTCGTTACAGACGAGCTCGCAGATACCAGTCTCTCTGCCCGGCCTGAATCTGGACGGGACGCATATACCCGCGAGCCACTTGCAGGCAGCCCACGCGCAAATGCAGCAGCAGATGCAgtcgcaacagcaacagctgcatcagcagcagcagcagcagcagcagcaacagcaacagcaacagcaacagcaacagcaacagcaacagcaacagcaacaatcTCAACAGGCACATCATCAGATGCAAAATCATCAGAATCCTCAGAACAGTGGACCAAACACTCAGAACGCTCAGCGTGACGACAATAAAGTCAAGGATGAAGGTGGCAGCTGCACCACCGAGAGATGCAGCGACAATCAAGTTCACTGTCAAGTTCAGTGCGATCTGCAGCTTCAACAGCCGCAGGATCTTCAGCAGAGTATGATGCAGCAACAGATTGGTGTGAATATAACCGGAAATACCGGTAACGATGCGGGAAATCAGAATAATTCCTCGAAACcggagaaggagaaggaaaTGCGCCAGCTGAACATGGCACAATTTCAAGTACCAGATTTGAAACCCGGAGGTCACATGATGGACGTCAGAACCGCGGACGGGTCGGTGGTGAAAATAAGCGCCGGTAACGAGCAAGATCTCGCTAAGACACTCGGAGTCGAGATGGTTCAAAACATGTACAAGGTCAACGTTGAGGATATAAATCAGTTATTGGCTTATCATGAGGTGTTCGGAAAGCTGCAGAGCGAGATTGCAGCTGGTACGGTCGGTGGCACGGTGCCGACGCAGACCGTAACTACGATACAGAACGGCACGCCGATCGTACAGCAGGTCCAATTAAACAAATTCGACGTAAAGTCTAGCGACGGAGAGGCAACACCAGGACCGAGTGCGTCGCCCGTCTCCGTCGGCAGTCACGCGTGCGAAGTTTGCGGAAAAATCTTTCAGTATCGCTATCAGCTCATAGTGCATCGCAGATATCACACCGAGCGAAAGCCATTCACATGTCAGGTTTGCGGCAAGGCGTTTTCAAACGCGAACGATCTTACCCGTCATGGAAAATGTCACTTGGGCGGCTCGATGTTCACATGCGCCGTTTGCTTTCACGTGTTCGCCAACGCTCCTTCGCTCGAGCGCCACATGAAGCGTCACGCCACTGACAAACCATACAATTGCACCGTTTGCGGCAAGAGCTTCGCTCGCAAGGAACATCTCGATAATCACACGCGCTGCCATACCGGCGAGACACCGTACCGGTGTCAGTACTGCGCGAAAACGTTCACACGCAAAGAACACATGGTAAATCACGTGCGTAAACACACGGGCGAGACACCGCATCGTTGCGATATATGCAAGAAGAGCTTCACCCGCAAGGAACACTTCATGAATCACGTTATGTGGCACACCGGGGAAACACCGCATCATTGTCAGGTGTGCGGCAAGAAGTACACGCGCAAGGAACATCTCGCTAATCATATGCGCTCGCATACCAATGACACGCCTTTCCGCTGTGAGATATGCGGTAAGTCGTTTACGAGGAAGGAACACTTCACGAACCACATAATGTGGCACACCGGTGAGACGCCGCATCGCTGTGACTTCTGCTCGAAGACGTTCACGCGAAAGGAGCATCTACTGAACCACGTACGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCAACAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGTGAAACACCTTTCCGCTGTCAATACTGTCCGAAAGCATTTACGCGGAAGGACCACCTGGTTAATCACGTCAGGCAGCACACGGGTGAGTCTCCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGTCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCACTTGACGAATCATGTGCGAATCCATACCGGCGAATCGCCGCATAGGTGTGAATTTTGCCAGAGGACGTTCACTAGGAAAGAACACCTCAATAATCATCTGCGTCAGCACACCGGTGATTCGTCACATTGTTGCAATGTTTGCAACAAACCATTCACGAGAAAGGAGCATCTCGTGAATCACATGCGTTGTCACACCGGCGAGCGTCCATTCGTCTGCACCGAGTGCGGCAAGAGCTTCCCGCTGAAGGGTAACCTTCTCTTCCACATGCGATCACACAACAAGGGCAGCAACGCCGAGCGACCATTCAGATGCGACTTGTGCCCGAAGGACTTCATGTGCAAGGGTCACTTGGTATCTCACCGACGTTCGCACTCGGACGAGCGGCCTCACAGTTGTCCTGATTGCGGCAAGACCTTCGTCGAAAAGGGCAACATGATGAGACATTTGCGAAAACACGCTGCGGAGGGACCGCCGACACAAGTCAGCACGGCCTCGGCTATTCCTCAGCCCGGAGTGTTACCGATACCGGCAGCGGCTGTTCTCGTCGGCCACCCTCTGGCTCCGCCTGCGCCTCCGGTCGTGCCGCAGCACACCGTCGTCGTGCCGACTCCACCGGGCGTTCTCGCGTCTTACTGA
Protein Sequence: MNSEQHALPATTQAQQEEVNSGQSCRPSYPGSLASSSSVGQVGSSPHTSADLRVGTAVALASSVAKYWVLTNLFPGPIPQVYPHHPHSSQRSGGSGDTIAKDSTASSLSQEMALTSGAHHQTPSSHHHHQTTVTAGNSNSISNNHHGSLQTSSQIPVSLPGLNLDGTHIPASHLQAAHAQMQQQMQSQQQQLHQQQQQQQQQQQQQQQQQQQQQQQQQQSQQAHHQMQNHQNPQNSGPNTQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQQPQDLQQSMMQQQIGVNITGNTGNDAGNQNNSSKPEKEKEMRQLNMAQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTVGGTVPTQTVTTIQNGTPIVQQVQLNKFDVKSSDGEATPGPSASPVSVGSHACEVCGKIFQYRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCNKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMMRHLRKHAAEGPPTQVSTASAIPQPGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00841278;
80% Identity: -