Lnyc009831.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- bab1
- Assembly
- GCA_963978505.1
- Location
- OZ021684.1:11093022-11095190[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-09 2.6e-06 27.0 0.0 1 36 340 376 340 382 0.87
Sequence Information
- Coding Sequence
- ATGGAGGTCTCGGAGGAATTTTGTCTGCGATGGAACAATCATCAGCAAAATTTGCGCACGACAATGGCCGAGCAGTACCAAAATCAGATCTTCACCGATGTTACACTTGGAGTCGAGGACGGTCATTCGATCCGATGTCACAAGATGATATTGGCTGCGAGCTCGCGATATTTTCAATCGATACTGATCGATCTTCCTTACGAGCATCCGATCGTCGTTCTTAGCGACGTAAAGTACAAGGAAATTATAGCGATACTGGAGTACATGTACAAGGGCGAGGTAAACGTACCGGGGAATGAATTGCCAGCTTTGTTCAAGGTTGCCGAAGCTCTGGAAGTTAAGGGGTTGGTAGGTGAAAATAAAGACTCCTCGCAGTCGAAATTCGGCAATCGGAGCGTCATTAATGCGCCCGAGGTTTGGGAACGCGTAAAGATTCACGAAGAAAGAGCGTCGCCTCCGAGCTCAGCGAGTTCTCCATATTGGTTGACCGGGAAACCTCGAGATACGAACGAGCACGAAATGGCGAAGCATTCCCCGTCCGCGTGGCCCGCGTTCTCCCAGGGCCTTCTCCCCGAAGGACCCAACAACCCGATAGCGGTCTTGCACTCGTCGCTATCGTCGAGATACTCACCCCTTCTCGGATCTCACTGCGACACCGATACGAAACTTTTTCCACGCCGAAGACGAAGGAGAAAACTTTCGAGCAAAGATATGACGATTAACCGAGGCATCCCGATGCCGAGAACGACTCTGGATCAGAGTCAGATCGGTGGCTCCCAACAAGTACCCGTCAATCCTCACGATTCGCATTATCGAACACTCGGTAACGACGCGACGATCAACGACGACGCTATCGAATCTCATCCGACTCGCAGTTCTGACGGGAGTGAAACTTGGATGGCCGAAGAGGACGACAACAGAGTGTCTCGTCTATCCTCCTCCGAAGAGACAAACGCAGGCAACGGCAACTGCGTTTCGGCAAGTAAACCCGGAATCGGTAAGCGTTACAAGCAGTACACTCATACGGACATAGAAGGAGCTATCACGGCTGTTCTCGAGAATGGGATGAGCGCGAACAAGGCCGCAGTCATGTTCAGAGTACCCTCGAGAACTCTGTACGACAAAATAAGCAGGGCCAAAAAGGAAGAAGTGCTGAGAGGCGGGGCTGCAGTTGGGACGTCGAAACGAAAGCGCAACGCGAGCAGCAGCGGCGCGTGTTTTCCGTACGGTCTACCAGGGACCAACGCTACCAGCAGCATTCATGGAAATTATTCGGACACACTACCGATCGACGATCCCGCATCGGTTCTGGAGACCACGTTGGCCGAGAGTCGCGACCATTCAGTGGATCGTGATgccaaattaaaaatcgacggaaaaagTTCGAGCCCGGTTCCGAGTCCTCGACTTCCGGTGCACCCTCAGGTTCCGCGTCGCGAGGGAAGCGACAACGAAGCGGAGGATCTCTCGGTGAGCCGTAAATCGGAAGTCAGCGTTATTGTGCCAACGAGAATTGTTATCAAAGAGCCTATTTAG
- Protein Sequence
- MEVSEEFCLRWNNHQQNLRTTMAEQYQNQIFTDVTLGVEDGHSIRCHKMILAASSRYFQSILIDLPYEHPIVVLSDVKYKEIIAILEYMYKGEVNVPGNELPALFKVAEALEVKGLVGENKDSSQSKFGNRSVINAPEVWERVKIHEERASPPSSASSPYWLTGKPRDTNEHEMAKHSPSAWPAFSQGLLPEGPNNPIAVLHSSLSSRYSPLLGSHCDTDTKLFPRRRRRRKLSSKDMTINRGIPMPRTTLDQSQIGGSQQVPVNPHDSHYRTLGNDATINDDAIESHPTRSSDGSETWMAEEDDNRVSRLSSSEETNAGNGNCVSASKPGIGKRYKQYTHTDIEGAITAVLENGMSANKAAVMFRVPSRTLYDKISRAKKEEVLRGGAAVGTSKRKRNASSSGACFPYGLPGTNATSSIHGNYSDTLPIDDPASVLETTLAESRDHSVDRDAKLKIDGKSSSPVPSPRLPVHPQVPRREGSDNEAEDLSVSRKSEVSVIVPTRIVIKEPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00905538;
- 90% Identity
- iTF_00905538;
- 80% Identity
- iTF_00905538;