Lnyc006772.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- Sry-delta
- Assembly
- GCA_963978505.1
- Location
- OZ021682.1:12105807-12108117[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-09 2.4e-06 27.0 0.1 4 38 24 57 21 60 0.92 2 2 6.2 6.6e+03 -3.2 0.0 30 38 85 93 85 96 0.84
Sequence Information
- Coding Sequence
- ATGCTTGTCGAACGTGAAGTCTCATGGAGGTATTGGCCCGCCCCTCGAAAGTTTCCTGACAACCCACGCGACATGTACAACGCGATGGAAGCAGTGAGAAACGGACTGTCCCTGAGGAAGGCAGCGGCAATGTTCTCCGTTACTAAGTCCAGACTTCATCGTTACGTTCGTCAGGATGCGAGGAATCTCGACATGTTGAACAATCAACGAGTGACTTATCCTTGCAAGAATTGTGGCAAGGTTTACAACTACTATTCAAGCTTGGCGAGGCATTTGAAGCACGAGTGTGGGGTGGAACCAAAATTCCATTGTCCATTGTGTCCTTACAGAACTAAGCACAAGTCGAGCTTGAACACGCATCTTAACGGTAGACACATGAAGCTGTTGAATGACTTCTACGTACTGCCGAATGGTCCCTGGCGCAGAAACGGACCGGAGATAATCCAGAAGATCGAGAGccgcaaatatttttgcccGAACTGCACCTCGTCATTCGACGTCGAGCAATGGTTGGAACATCACATGAAGGAGTGCAAGAGACCTGCTGTACTGCACTGTCCTCACTGCTCGCACTACAAGAGCAAGAAGAAGTACAATTTGCGCAGGCATATACTGCACATTCACGGCCGGGTACTTTGA
- Protein Sequence
- MLVEREVSWRYWPAPRKFPDNPRDMYNAMEAVRNGLSLRKAAAMFSVTKSRLHRYVRQDARNLDMLNNQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLNDFYVLPNGPWRRNGPEIIQKIESRKYFCPNCTSSFDVEQWLEHHMKECKRPAVLHCPHCSHYKSKKKYNLRRHILHIHGRVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00059052;
- 90% Identity
- iTF_00059052;
- 80% Identity
- iTF_00905732;