Lnyc002622.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- lola
- Assembly
- GCA_963978505.1
- Location
- OZ021680.1:6492659-6500999[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-16 2.1e-13 49.7 0.0 2 42 413 454 412 457 0.94
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAATTCTGTCTGCGATGGAACAATCATCAACCAAACTTCATATCTGTATTCTCGTCGTTGTTGAATAACGAGACTCTGGTGGACGTAACTTTGGCCGCCGAAGGTCGTCATCTTCAAGCACACAAAGTCGTACTGTCGGCGTGTAGCACTTACTTTCAGTCTCTCTTCACCGTCAATCCCTGCCAACATCCTATTGTCATTCTCAAAGATGTCAAATTCTCCGATCTCAAGATCATGGTGGATTTTATGTATTACGGCGAAGTCAACGTCTCGCAGGATCAATTGCCCTCAATAATAAAGACTGCAGAGAGTTTGAAGATCAAGGGCCTGGCGGAGATGCATACAGCCTCGTTGACTAAATGGCCCAGTGGAGGCAGCGAGCCTGGCGGGGGAGATCGCGGCGAGTCGTGTTCACCGAGTCCATCGCCCTTGTCGCCGTCTTTTCGCAGAAAGCGGCTGAGAAAAACTTCAACCGGTTCGACGTCGGCTGGCTCGGCCGACAAACCCGAGGAAATGAACGAGATTACACTAGTTGCCACAAATATCGTAAAACCCGAGCCACACATTGTTTCGCAAGAGAGTAGTGAAAATGTTAGACGTCCCCTTAACACAACAACCGAATCGCAAGGCAGTATTGACGAGGATCAGATATCGATTATGAGTAATATGGAAAGCAGCACAGCGACGACGCCAGCCCAGAGCGAAGGTTCTTTGCAAGAAGTGAGCCAACAACCTGGTGGAAATAACGGTCAGAATTCCGTCTCTTCGCAGCCACCAGCCCACCAAGGATTGCAATGGACAATAATGGAGCATACGTATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCCTCGTCGGCGTTCACGACGCCCGAAATAACAGCGACATCGAGCATCAGCGAGCATCAGTACCAGTCGGCGGGCGGTACGAGTACGACGACAGCCTCGAGCTGCGCCCTGACGAGTTATCCGAATTCGTCGTCCCACGGTCCGTTGCAGCACACATCGAACTcgagcggcggcggcagcggcgggggcggcggcggcggaggaCCCGGAAATGGTGGAAATGGCGGTGGCGCTGGAAATAACGGTGGTAACGGATCGGGAGGTCCGTCACCGACGACCCAATGTCCCAGCAACTGCCAGAGTCCCTGTGCCAGTCCTCAGACGacgataaagagaaaaagatcgaCGAATCCGCAGGcggacgaaaatttcattcgtgcACTGGAGGCGGTGCGTTACGGCGGTATAGGTTTTTGCAAAGCAGCCCGTATGTTCGGCGTTAACAATCGAACTCTGTGGCTCGAGTACAAGAAACGTGGCTATCCGAACAATCGTCCGAGCTTAAAGTCTCGTGTTAAGCAGGAAGTTAATGCATCACCGCCGCCAGCACCATCGTCGCAGCCGGTGAACTCCCAAAGCCCGACACCGATGGGCCCCCCAACGACACCACACAGTACCCACAACACACACCCCACTCACACAATGCTAACAGCCCACACGCCTCATACAATGCTATCCGGATACATCGACAGCAGACACACGGATTACTCACTTCCGAGCACAACGATGCCGATTAACTTGCACGGAGTCAATTACAACTCTATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGGSEPGGGDRGESCSPSPSPLSPSFRRKRLRKTSTGSTSAGSADKPEEMNEITLVATNIVKPEPHIVSQESSENVRRPLNTTTESQGSIDEDQISIMSNMESSTATTPAQSEGSLQEVSQQPGGNNGQNSVSSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITATSSISEHQYQSAGGTSTTTASSCALTSYPNSSSHGPLQHTSNSSGGGSGGGGGGGGPGNGGNGGGAGNNGGNGSGGPSPTTQCPSNCQSPCASPQTTIKRKRSTNPQADENFIRALEAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNASPPPAPSSQPVNSQSPTPMGPPTTPHSTHNTHPTHTMLTAHTPHTMLSGYIDSRHTDYSLPSTTMPINLHGVNYNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629212;
- 90% Identity
- iTF_01497564;
- 80% Identity
- iTF_00905510;