Lnyc005099.2
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- KBTBD4
- Assembly
- GCA_963978505.1
- Location
- OZ021681.1:16552460-16554692[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-06 0.0038 16.8 0.0 3 42 239 278 237 281 0.84 2 4 1e-14 1.1e-11 44.2 0.0 2 39 288 324 287 331 0.86 3 4 0.0017 1.8 8.2 0.0 7 34 345 371 341 377 0.86 4 4 1.4e-10 1.4e-07 31.0 0.2 4 39 402 437 399 441 0.93
Sequence Information
- Coding Sequence
- ATGGACCAGGCGTCGAAGGTCATGTTTGTCGAGCCTAGTCCCGTTCCAAGTTCCTGTGCGCGTGTGTATCACATGCTAAAAGttggaaaagaaacgaaactgGAAACTACCATGTCTGCGATAGTAGCGTGCGGTCAGAACCACATCGAGGAGAGCTATTGTTTCAAATGGAGCGATTATCAGAATCACTTGTCGGGCGTCGTTCGGCAGCTTCTCGAGGAGGAATGCATGGTCGACGTGACCCTCGTCGCTGCCGGGGAGCGCATACATGCCCATCGTATCGTTCTCTGCTCCTGCAGCACTTTGTTTCAAGAGGTACTGAGTCAGGTGACCGAGGATCACCCAACGATAATACTGAGCGACATATCGGCACAGGACATGAGATCCATTGTAGAGTTCAGTTATCACGGAGAAGTTAGAATTCCTGTTGAGGACATAAGCAACTTGCTCGAGGCTGCCCATTCGTTGAAGATATGCGGCCTCATGGAGATCGATGGTCTCGACGAGAACGATGCGATCATAAGTGCGAGAGATTTGAACGAGGACCATACCGATTTCAACGATTCCGATGGTAAGGGTTTTGAGCATTTCGAAGATACAGAGATGAGTCgggacgaggaaaaacattCCGATGACGTCGATAAAGACAACAACGGtgtgcgtggaaaaaaaagaaaacgtcgaAAGGACACGTTAAAGCGGGAATACAACGATGACATGTTAGTGTCGGCGATAAACGACCTGAGATCGGGTCAAACGCTTATAGAGGCTGCGACGAGGAACAATATACCGCGATCGACGCTCTATATGAGAGCCAAAGCGCTCGGAATACAGTTGAGCGCCTCGCGAAACGAGTATCCACCGGAATGCATGAAAGCGGCGATTGAGGCGGTCGTCGGAGGTTTGAGTTTGCAGCAAGCCTCGGAGAAATTCGACATACCGAAAACTGTTCTATGGCGACGAATACAAAAGGAGGGCTACCAAATCCTGCGCACGGAAATTAAAAGATCTTACGGCTCGGAGAAGAGGGAGGCGGCCGTTAAAGCGCTCCAACGGGGTGAAAATCTCTCGAAAGTCGCGATGGAGTTTCAGatacCGAAGACAACGCTGTTTCGCGATAAAgcgagactcgtcgacgaaggAAAGCTTCCGGAGTCCTTctggaagaagaggaagaccGGCGACGAGCACGTGAAGAGATTGCGACTCGAGGAGGCCGTGGCTGCGTGCAAAGGCGGAAGAATGTCTCAGGCGGCGGCGTCGATGGCATACCGGATACCGAAGACAACGATTTGGCGACGACTCCAGCAGGAAGGAAAGACCATCGAGTGCCCCGCAGGTTCGAAGGAATCGTGTATAGATGAGGAGATCGACGACCACAAAGACGTACAACAGAGTCCCGAGTTCTCGTTCTGCGAGGTGTCTTCGGAAATTCCCATAACGTACATAGACGAGAACATACCCGAGAACTCCGTCATAATATTGACGACCCAAGATGTCGACGGTTTGAATCTCGAGGCAGGCAGACAGATAATCGTGAATCAAgaTTCCCGACAGGAGTATGTTCGGTGCGCTCTGAGCATCGGAGAAAACAATGACAGTGCCGAATACCAGCCGGCAGAGAGTTAA
- Protein Sequence
- MDQASKVMFVEPSPVPSSCARVYHMLKVGKETKLETTMSAIVACGQNHIEESYCFKWSDYQNHLSGVVRQLLEEECMVDVTLVAAGERIHAHRIVLCSCSTLFQEVLSQVTEDHPTIILSDISAQDMRSIVEFSYHGEVRIPVEDISNLLEAAHSLKICGLMEIDGLDENDAIISARDLNEDHTDFNDSDGKGFEHFEDTEMSRDEEKHSDDVDKDNNGVRGKKRKRRKDTLKREYNDDMLVSAINDLRSGQTLIEAATRNNIPRSTLYMRAKALGIQLSASRNEYPPECMKAAIEAVVGGLSLQQASEKFDIPKTVLWRRIQKEGYQILRTEIKRSYGSEKREAAVKALQRGENLSKVAMEFQIPKTTLFRDKARLVDEGKLPESFWKKRKTGDEHVKRLRLEEAVAACKGGRMSQAAASMAYRIPKTTIWRRLQQEGKTIECPAGSKESCIDEEIDDHKDVQQSPEFSFCEVSSEIPITYIDENIPENSVIILTTQDVDGLNLEAGRQIIVNQDSRQEYVRCALSIGENNDSAEYQPAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00397441;
- 90% Identity
- iTF_00721168;
- 80% Identity
- iTF_00905533;